Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   NY149_RS06815 Genome accession   NZ_CP116613
Coordinates   1554780..1555388 (+) Length   202 a.a.
NCBI ID   WP_021676778.1    Uniprot ID   -
Organism   Porphyromonas gingivalis strain HG1691old     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1549780..1560388
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY149_RS06785 (NY149_06785) - 1551157..1551474 (-) 318 WP_013815805.1 helix-turn-helix domain-containing protein -
  NY149_RS06790 (NY149_06790) - 1551458..1551811 (-) 354 WP_004584306.1 helix-turn-helix domain-containing protein -
  NY149_RS06795 (NY149_06795) - 1552033..1552311 (+) 279 WP_004584305.1 helix-turn-helix domain-containing protein -
  NY149_RS06800 (NY149_06800) - 1552348..1552650 (+) 303 WP_004584304.1 helix-turn-helix domain-containing protein -
  NY149_RS06805 (NY149_06805) - 1552700..1553062 (-) 363 WP_004584303.1 hypothetical protein -
  NY149_RS06810 (NY149_06810) - 1553080..1554315 (-) 1236 WP_013815804.1 site-specific integrase -
  NY149_RS06815 (NY149_06815) ruvA 1554780..1555388 (+) 609 WP_021676778.1 Holliday junction branch migration protein RuvA Machinery gene

Sequence

Protein


Download         Length: 202 a.a.        Molecular weight: 21542.93 Da        Isoelectric Point: 5.3412

>NTDB_id=710504 NY149_RS06815 WP_021676778.1 1554780..1555388(+) (ruvA) [Porphyromonas gingivalis strain HG1691old]
MIEYLKGAIVDLTPTNLVIECAGVGYDVNVSLTTYSAYQGKKEGLIWITQLIREDAHLLYGFSTKEERTLFGQLTSVSGV
GPTTARLILSSYAPQELAALITTGQADALKAVKGIGLKTAQRIIVDLKGKIQLETSSDEILSARTAVGDAALNTIASGEE
AISALKMLGFADPAIRKAVKSILSEDSSLAVEDIIKRALRML

Nucleotide


Download         Length: 609 bp        

>NTDB_id=710504 NY149_RS06815 WP_021676778.1 1554780..1555388(+) (ruvA) [Porphyromonas gingivalis strain HG1691old]
ATGATAGAGTATCTCAAGGGAGCAATAGTCGATTTGACGCCAACAAACCTCGTGATCGAGTGTGCGGGAGTGGGTTATGA
TGTGAATGTCTCGCTCACCACTTATTCTGCCTATCAGGGGAAGAAAGAGGGACTTATTTGGATTACACAACTGATCCGAG
AAGATGCCCATTTATTGTATGGCTTTTCCACGAAAGAAGAGCGTACGCTCTTCGGCCAACTCACATCTGTCAGCGGTGTC
GGGCCTACGACGGCACGGCTCATCCTATCCTCCTATGCTCCTCAAGAGCTGGCCGCACTCATTACCACAGGGCAGGCCGA
TGCGCTGAAAGCCGTGAAGGGCATCGGCCTGAAGACCGCTCAGCGTATCATCGTGGATCTGAAAGGTAAGATACAGCTGG
AAACCTCCTCAGACGAGATCTTGTCTGCACGGACGGCTGTAGGAGATGCTGCTCTGAATACCATAGCTTCGGGAGAAGAA
GCCATCAGTGCTCTAAAGATGCTTGGCTTTGCCGATCCGGCTATACGCAAAGCGGTCAAGTCCATTCTCTCCGAGGATTC
GTCCTTAGCTGTCGAAGATATTATCAAGCGAGCATTACGAATGTTATAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(159-200)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Bacillus subtilis subsp. subtilis str. 168

37.143

100

0.386
  ruvA Streptococcus pneumoniae TIGR4

37.624

100

0.376
  ruvA Streptococcus pneumoniae R6

37.129

100

0.371
  ruvA Streptococcus pneumoniae D39

37.129

100

0.371