Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   NY148_RS03625 Genome accession   NZ_CP116612
Coordinates   839614..840237 (+) Length   207 a.a.
NCBI ID   WP_004584582.1    Uniprot ID   Q7MV45
Organism   Porphyromonas gingivalis strain A7436-C     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 834614..845237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NY148_RS03610 (NY148_03610) nrdG 836900..837391 (+) 492 WP_004584586.1 anaerobic ribonucleoside-triphosphate reductase activating protein -
  NY148_RS03615 (NY148_03615) - 837503..837781 (+) 279 WP_004584585.1 HU family DNA-binding protein -
  NY148_RS03620 (NY148_03620) - 838103..839617 (+) 1515 WP_004584583.1 Rne/Rng family ribonuclease -
  NY148_RS03625 (NY148_03625) recR 839614..840237 (+) 624 WP_004584582.1 recombination mediator RecR Machinery gene
  NY148_RS03630 (NY148_03630) - 840244..840771 (+) 528 WP_005874739.1 GNAT family N-acetyltransferase -
  NY148_RS03635 (NY148_03635) ligA 840759..842768 (+) 2010 WP_005874735.1 NAD-dependent DNA ligase LigA -
  NY148_RS03640 (NY148_03640) - 842781..844016 (+) 1236 WP_005874743.1 ABC transporter permease -
  NY148_RS03645 (NY148_03645) - 844183..844530 (-) 348 WP_236683456.1 hypothetical protein -
  NY148_RS03650 (NY148_03650) - 844761..844934 (-) 174 WP_230456085.1 hypothetical protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 23056.33 Da        Isoelectric Point: 5.5935

>NTDB_id=710464 NY148_RS03625 WP_004584582.1 839614..840237(+) (recR) [Porphyromonas gingivalis strain A7436-C]
MIQKYSSRLLEKAIDQFATLPGVGRKTALRLALYLLRQPVENTRQFAAALVDLREHISYCRHCHNISDSDVCTICADPTR
DQSTLCVVENIRDVMAIENTSQYRGLYHVLGGVISPMDGIGPGDLQIDSLVHRVASEQIHEVILALSTTMEGDTTNFFLF
RKLEPTGVRVSVIARGIAIGDEIEYADEITLGRSILNRTDFSDSVKF

Nucleotide


Download         Length: 624 bp        

>NTDB_id=710464 NY148_RS03625 WP_004584582.1 839614..840237(+) (recR) [Porphyromonas gingivalis strain A7436-C]
ATGATACAGAAATATTCTTCGCGTCTGCTTGAGAAGGCGATAGACCAATTTGCCACATTGCCGGGTGTAGGGCGCAAGAC
AGCCCTGCGCCTGGCTTTGTACTTATTGCGCCAACCTGTGGAAAATACCCGTCAATTTGCAGCAGCCCTTGTAGATCTTC
GGGAACATATTTCCTATTGCAGGCACTGTCATAATATCAGTGATTCCGATGTTTGTACTATCTGTGCAGACCCCACTCGG
GATCAGAGTACACTCTGCGTAGTAGAGAATATCCGTGACGTTATGGCTATCGAGAATACCTCACAGTATCGAGGCTTGTA
TCATGTACTCGGTGGAGTCATATCTCCCATGGATGGGATCGGCCCGGGCGATTTGCAAATAGATTCTTTGGTGCATCGAG
TAGCTTCTGAGCAGATTCATGAGGTTATATTGGCTTTGAGTACGACGATGGAGGGCGATACTACCAACTTTTTCCTCTTT
CGCAAGTTGGAGCCTACCGGCGTTCGGGTCAGTGTAATTGCTCGAGGCATTGCTATAGGCGATGAGATCGAATATGCCGA
TGAGATTACCCTCGGTCGTTCTATTCTCAATCGTACCGATTTCTCCGACTCAGTCAAATTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(83-174)

RecR protein (RecR_ZnF)

(43-81)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q7MV45

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

96.135

0.464
  recR Streptococcus pneumoniae R6

46.875

92.754

0.435
  recR Bacillus subtilis subsp. subtilis str. 168

44.792

92.754

0.415