Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NNL22_RS12715 Genome accession   NZ_CP101527
Coordinates   2867550..2868911 (+) Length   453 a.a.
NCBI ID   WP_251811348.1    Uniprot ID   A0A9E8HIC8
Organism   Alkalimarinus sediminis strain FA028     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 2862550..2873911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NNL22_RS12700 (NNL22_12690) - 2863237..2864061 (+) 825 WP_251811345.1 outer membrane protein assembly factor BamD -
  NNL22_RS12705 (NNL22_12695) - 2864112..2865740 (-) 1629 WP_251811346.1 NAD+ synthase -
  NNL22_RS12710 (NNL22_12700) - 2865882..2867537 (+) 1656 WP_251811347.1 sensor histidine kinase -
  NNL22_RS12715 (NNL22_12705) pilR 2867550..2868911 (+) 1362 WP_251811348.1 sigma-54-dependent transcriptional regulator Regulator
  NNL22_RS12720 (NNL22_12710) thiO 2868987..2870093 (-) 1107 WP_251811349.1 glycine oxidase ThiO -
  NNL22_RS12725 (NNL22_12715) - 2870164..2870763 (+) 600 WP_251811350.1 GspH/FimT family protein -
  NNL22_RS12735 (NNL22_12725) - 2870927..2871379 (+) 453 WP_275116309.1 type IV pilin protein -
  NNL22_RS12740 (NNL22_12730) - 2871534..2872004 (+) 471 WP_251811351.1 GspH/FimT family pseudopilin -
  NNL22_RS12745 (NNL22_12735) pilV 2872019..2872543 (+) 525 WP_251811352.1 type IV pilus modification protein PilV -
  NNL22_RS12750 (NNL22_12740) - 2872540..2873544 (+) 1005 WP_251811353.1 PilW family protein -

Sequence

Protein


Download         Length: 453 a.a.        Molecular weight: 50346.71 Da        Isoelectric Point: 4.8424

>NTDB_id=710406 NNL22_RS12715 WP_251811348.1 2867550..2868911(+) (pilR) [Alkalimarinus sediminis strain FA028]
MTIKTALIVDDEPDIRELLEITLMRMGIETQTAENLTKAKALLEQHDFNLCLTDMNLPDGNGIDLVCHIQQCFPHIPVAV
ITAYGSVETAITSLKSGAFDFVSKPVDLARLRELVSSALKLTEEKKVSKEAVETGNLLLGESPEMERLRKQIRKLARSQA
PVYISGESGSGKELVARMMHLQGPRSEAAFVPVNCGAIPSELMESEFFGHKKGSFSGAVDNKEGLFQAANGGTLFLDEVA
DLPIGMQVKLLRAIQEKAVRAVGDQKEVAVDVRILSATHKNLAELVEAGEFRQDLYYRINVIELDVPKLRDRAGDIPLLA
NHILQRIAEECDVFDATISDEAMKCLKEYHFPGNVRELENIIERAFTLCEDDIIEASDLQLRPASKSDGAMEFSENAAKR
SDETSLEDFLEGIERKTIEQALEETRWNKTAAAKKLGITFRALRYRLKKLGME

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=710406 NNL22_RS12715 WP_251811348.1 2867550..2868911(+) (pilR) [Alkalimarinus sediminis strain FA028]
ATGACCATTAAAACAGCCCTTATTGTTGACGATGAACCCGACATTAGAGAATTGTTAGAAATTACTCTTATGAGAATGGG
CATAGAGACACAAACGGCAGAAAACTTAACTAAAGCGAAGGCGTTGTTAGAGCAGCATGACTTTAATTTATGTCTGACAG
ATATGAACCTGCCCGATGGTAATGGTATCGACTTGGTCTGCCATATACAGCAATGCTTCCCGCACATCCCAGTGGCCGTT
ATTACCGCCTATGGTAGTGTTGAAACAGCCATCACATCGCTAAAATCGGGGGCATTTGACTTTGTATCCAAACCCGTAGA
CCTCGCCAGGTTGAGAGAGCTGGTTAGCTCAGCCCTAAAACTCACCGAAGAGAAAAAAGTAAGTAAAGAAGCCGTCGAAA
CCGGGAATCTTTTACTAGGAGAGTCTCCCGAGATGGAACGTTTGCGCAAACAGATACGCAAGCTAGCGCGCAGCCAAGCA
CCGGTATACATCAGTGGCGAGTCAGGCAGCGGTAAAGAGTTAGTCGCACGCATGATGCACTTACAAGGCCCTAGATCAGA
AGCCGCATTTGTACCAGTAAACTGCGGAGCGATACCTAGCGAACTCATGGAAAGTGAGTTCTTTGGTCATAAAAAAGGGA
GCTTTAGCGGAGCTGTCGATAATAAAGAAGGGCTTTTTCAGGCTGCTAATGGTGGTACGTTATTTCTAGATGAAGTCGCT
GATCTACCGATTGGTATGCAAGTAAAGCTGCTAAGAGCGATACAGGAGAAGGCAGTACGCGCGGTAGGCGACCAAAAAGA
AGTGGCCGTTGACGTCAGAATACTCAGTGCCACCCATAAAAACCTCGCCGAATTAGTGGAAGCGGGCGAGTTTCGACAAG
ACCTTTACTACCGAATTAACGTAATCGAGCTAGACGTCCCAAAACTACGGGACCGTGCTGGCGACATTCCACTACTTGCA
AACCATATACTGCAACGCATTGCAGAAGAGTGTGACGTCTTTGATGCCACAATAAGTGATGAGGCGATGAAGTGCCTTAA
AGAGTATCACTTTCCAGGCAATGTTCGCGAACTTGAGAACATCATCGAACGGGCTTTCACCCTCTGTGAAGACGATATTA
TCGAGGCGAGTGACCTACAACTTCGTCCCGCTAGCAAATCAGACGGTGCTATGGAGTTTTCAGAAAACGCAGCAAAGAGA
AGTGATGAGACTTCACTGGAAGACTTCTTAGAAGGTATTGAGAGAAAGACCATCGAGCAGGCCTTAGAGGAGACTCGTTG
GAACAAAACCGCTGCCGCGAAAAAGCTTGGCATCACATTCAGAGCATTGCGATACCGACTGAAAAAGCTAGGGATGGAAT
AA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(138-304)

Bacterial regulatory protein, Fis family (HTH_8)

(410-450)

Response regulator receiver domain (Response_reg)

(7-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

67.108

100

0.671
  pilR Acinetobacter baumannii strain A118

50.218

100

0.508