Detailed information NTG0710405

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NNL22_RS10375
• Genome accession: NZ_CP101527
• Coordinates: 2334339..2335208 (+)
• Length: 289 a.a.
• NCBI ID: WP_251809593.1
• Uniprot ID: A0A9E8HHH8
• Organism: Alkalimarinus sediminis strain FA028
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2329339..2340208

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NNL22_RS10355 (NNL22_10345)	-	2330518..2330994 (-)	477	WP_275116306.1	pilin	-
NNL22_RS10365 (NNL22_10355)	pilB	2331339..2333048 (+)	1710	WP_251809591.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NNL22_RS10370 (NNL22_10360)	pilC	2333051..2334271 (+)	1221	WP_251809592.1	type II secretion system F family protein	Machinery gene
NNL22_RS10375 (NNL22_10365)	pilD	2334339..2335208 (+)	870	WP_251809593.1	prepilin peptidase	Machinery gene
NNL22_RS10380 (NNL22_10370)	coaE	2335215..2335802 (+)	588	WP_251809594.1	dephospho-CoA kinase	-
NNL22_RS10385 (NNL22_10375)	yacG	2335892..2336119 (+)	228	WP_251809595.1	DNA gyrase inhibitor YacG	-
NNL22_RS10390 (NNL22_10380)	-	2336168..2336614 (+)	447	WP_251809596.1	HIT family protein	-
NNL22_RS10395 (NNL22_10385)	-	2336630..2336989 (+)	360	WP_251809597.1	CidA/LrgA family protein	-
NNL22_RS10400 (NNL22_10390)	-	2336986..2337705 (+)	720	WP_251809598.1	LrgB family protein	-
NNL22_RS10405 (NNL22_10395)	tsaA	2337717..2338430 (+)	714	WP_251809599.1	tRNA (N6-threonylcarbamoyladenosine(37)-N6)-methyltransferase TrmO	-
NNL22_RS10410 (NNL22_10400)	-	2338555..2338992 (-)	438	WP_251809600.1	PilZ domain-containing protein	-
NNL22_RS10415 (NNL22_10405)	-	2339136..2339387 (+)	252	WP_251810022.1	YkgJ family cysteine cluster protein	-

Sequence

Protein

• Length: 289 a.a.
• Molecular weight: 31909.08 Da
• Isoelectric Point: 6.2252

>NTDB_id=710405 NNL22_RS10375 WP_251809593.1 2334339..2335208(+) (pilD) [Alkalimarinus sediminis strain FA028]
MQNFEIFLNSPIFLYPSIFILGLIIGSFLNVVIFRIPKMLEQEWKSQCCELLETECKEEPKVTLSTPNSTCPKCGHEIKP
WENIPVISYLFLRGKCSSCKTSISLRYPIIELVTGVLSLSVICVIGANWAGFSALILTWVLIALTMIDFDTQLLPDNMTL
PLVWLGLIVNANGLFVPLEEALWGAVAGYLSLWAVYHGFKLLTGKEGMGFGDFKLLAALGAWMGWQLLPVIILLSSLVGA
VVGILLIAIKGRDKNIPIPFGPYLAAAGWLALLWGHDITQAYLQFSGMK

Nucleotide

• Length: 870 bp

>NTDB_id=710405 NNL22_RS10375 WP_251809593.1 2334339..2335208(+) (pilD) [Alkalimarinus sediminis strain FA028]
ATGCAAAATTTCGAAATCTTTTTAAACTCCCCTATATTCTTATACCCCTCAATCTTCATCCTAGGCCTAATCATCGGCAG
TTTCTTAAACGTTGTTATCTTCCGCATCCCCAAAATGCTAGAACAAGAGTGGAAGTCTCAGTGCTGCGAGCTATTAGAAA
CAGAGTGCAAGGAAGAACCCAAAGTCACGCTTTCTACACCCAATTCTACTTGCCCTAAATGCGGTCATGAAATTAAGCCT
TGGGAGAATATTCCCGTTATCAGCTATCTATTTCTTAGAGGTAAATGCTCTTCATGCAAAACCTCAATATCACTTAGGTA
CCCGATTATTGAGTTAGTCACTGGGGTTTTGTCTTTATCGGTTATTTGCGTCATTGGCGCTAACTGGGCAGGTTTTTCTG
CGTTGATATTAACCTGGGTGCTGATTGCGCTAACCATGATTGATTTTGACACTCAGTTACTCCCAGACAACATGACCCTA
CCACTTGTTTGGCTTGGTCTTATAGTCAACGCCAACGGTTTATTTGTGCCGCTGGAAGAGGCTCTTTGGGGTGCAGTTGC
GGGTTATTTAAGCCTCTGGGCGGTATATCACGGGTTTAAGCTGCTAACAGGCAAAGAGGGCATGGGCTTTGGTGACTTTA
AGTTACTTGCTGCCTTAGGCGCTTGGATGGGGTGGCAGCTCCTCCCGGTCATTATTCTTTTATCCTCGTTGGTTGGTGCG
GTTGTCGGCATATTGCTGATTGCGATAAAGGGACGCGATAAAAATATCCCAATCCCATTTGGCCCTTACCTAGCGGCTGC
AGGTTGGTTGGCGTTACTTTGGGGGCACGATATTACCCAAGCATATTTACAGTTTTCAGGCATGAAGTGA

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-122)

• Type IV leader peptidase family (Peptidase_A24) (135-244)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Acinetobacter baumannii D1279779	54.122	96.54	0.522
pilD	Acinetobacter nosocomialis M2	54.122	96.54	0.522
pilD	Vibrio campbellii strain DS40M4	51.064	97.578	0.498
pilD	Vibrio cholerae strain A1552	51.613	96.54	0.498
pilD	Neisseria gonorrhoeae MS11	54.231	89.965	0.488