Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   K6J68_RS02895 Genome accession   NZ_AP018773
Coordinates   577316..578113 (+) Length   265 a.a.
NCBI ID   WP_005686900.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-2 isolate 13H39     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 572316..583113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J68_RS02875 (CHBNIII2_05530) recR 572557..573159 (-) 603 WP_005626527.1 recombination mediator RecR -
  K6J68_RS02880 (CHBNIII2_05540) - 573217..573546 (-) 330 WP_011961681.1 YbaB/EbfC family nucleoid-associated protein -
  K6J68_RS02885 (CHBNIII2_05550) - 573699..574544 (-) 846 WP_011961682.1 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ -
  K6J68_RS02890 (CHBNIII2_05560) - 574617..577217 (-) 2601 WP_110459483.1 penicillin-binding protein 1A -
  K6J68_RS02895 (CHBNIII2_05570) comA 577316..578113 (+) 798 WP_005686900.1 pilus assembly protein PilM Machinery gene
  K6J68_RS02900 (CHBNIII2_05580) comB 578114..578620 (+) 507 WP_005649305.1 competence protein ComB Machinery gene
  K6J68_RS02905 (CHBNIII2_05590) comC 578617..579138 (+) 522 WP_044345309.1 competence protein ComC Machinery gene
  K6J68_RS02910 (CHBNIII2_05600) comD 579135..579548 (+) 414 WP_105197661.1 pilus assembly protein PilP Machinery gene
  K6J68_RS02915 (CHBNIII2_05610) comE 579558..580895 (+) 1338 WP_005686897.1 type IV pilus secretin PilQ family protein Machinery gene
  K6J68_RS02920 (CHBNIII2_05620) - 580908..581594 (+) 687 WP_005686895.1 ComF family protein -
  K6J68_RS02925 (CHBNIII2_05630) nfuA 581670..582266 (+) 597 WP_005656459.1 Fe-S biogenesis protein NfuA -

Sequence

Protein


Download         Length: 265 a.a.        Molecular weight: 31601.99 Da        Isoelectric Point: 6.2348

>NTDB_id=71032 K6J68_RS02895 WP_005686900.1 577316..578113(+) (comA) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
MQFSLKNYRTLQIGIHRKQSYFDFVWFDDLEQPQSYQIFVNDRYFKNRFLQQLKTQYQGKTFPLQFVASIPTHLTWSKVL
MLPQVLNAQECHQQCKFVIEKELPIFLEELWFDYRSTPLKQGFRLEVTAIRKSTAQTYLQDFQPFKINVLDVASNAVLRA
FQYLLNEQVRSENTLFLFQEDDYCLAICERSQQSQILQSHENLTALYEQFTERFEGQLEQVFVYQIPSSHTPLLENWQRV
ETELPFIALGNALWQKDLHQQKVGG

Nucleotide


Download         Length: 798 bp        

>NTDB_id=71032 K6J68_RS02895 WP_005686900.1 577316..578113(+) (comA) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
ATGCAATTCTCCCTGAAAAATTACCGCACTTTACAAATCGGCATTCATCGTAAGCAGAGTTATTTTGATTTTGTGTGGTT
TGATGATCTCGAACAGCCACAAAGTTATCAAATCTTTGTTAATGATCGTTATTTTAAAAATCGTTTTTTACAACAGCTAA
AAACACAATATCAAGGGAAAACCTTTCCTTTGCAGTTTGTAGCAAGCATTCCCACTCACTTAACTTGGTCGAAAGTATTA
ATGTTGCCACAAGTGTTAAATGCGCAAGAATGTCATCAACAATGTAAATTTGTGATTGAAAAAGAGCTGCCTATTTTTTT
AGAAGAATTGTGGTTTGATTATCGTTCTACCCCGTTAAAGCAAGGTTTTCGATTAGAGGTTACTGCAATTCGTAAAAGTA
CTGCTCAAACTTATTTGCAAGATTTTCAGCCATTTAAAATTAATGTATTGGATGTTGCGTCAAATGCTGTTTTGCGTGCA
TTTCAATATCTGTTGAATGAACAAGTGCGGTCAGAAAATACCTTATTTTTATTTCAAGAAGATGACTATTGCTTGGCGAT
TTGTGAAAGATCTCAGCAATCACAAATTTTACAATCTCACGAAAATTTGACCGCACTTTATGAACAATTTACCGAACGTT
TTGAAGGACAACTTGAACAAGTTTTTGTTTATCAAATTCCCTCAAGTCATACACCATTACTAGAAAATTGGCAGCGAGTA
GAAACAGAACTCCCTTTTATTGCGCTTGGCAACGCGCTATGGCAAAAAGATTTACATCAACAAAAAGTGGGTGGTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Haemophilus influenzae Rd KW20

98.113

100

0.981
  comA Haemophilus influenzae 86-028NP

96.604

100

0.966

Multiple sequence alignment