Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   NM966_RS15310 Genome accession   NZ_CP101506
Coordinates   2909710..2910351 (-) Length   213 a.a.
NCBI ID   WP_007500477.1    Uniprot ID   -
Organism   Bacillus altitudinis strain B12     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2904710..2915351
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM966_RS15275 (NM966_15220) - 2905838..2906269 (+) 432 WP_008345843.1 Na(+)/H(+) antiporter subunit B -
  NM966_RS15280 (NM966_15225) - 2906269..2906610 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  NM966_RS15285 (NM966_15230) - 2906603..2908081 (+) 1479 WP_017358945.1 Na+/H+ antiporter subunit D -
  NM966_RS15290 (NM966_15235) - 2908088..2908567 (+) 480 WP_017358944.1 Na+/H+ antiporter subunit E -
  NM966_RS15295 (NM966_15240) - 2908567..2908848 (+) 282 WP_008345849.1 Na(+)/H(+) antiporter subunit F1 -
  NM966_RS15300 (NM966_15245) mnhG 2908832..2909206 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  NM966_RS15305 (NM966_15250) - 2909297..2909686 (-) 390 WP_017358943.1 hotdog fold thioesterase -
  NM966_RS15310 (NM966_15255) comA 2909710..2910351 (-) 642 WP_007500477.1 response regulator transcription factor Regulator
  NM966_RS15315 (NM966_15260) comP 2910432..2912738 (-) 2307 WP_017358942.1 ATP-binding protein Regulator
  NM966_RS15320 (NM966_15265) comX 2912752..2912922 (-) 171 WP_017358941.1 competence pheromone ComX -
  NM966_RS15325 (NM966_15270) - 2912900..2913823 (-) 924 WP_017358940.1 polyprenyl synthetase family protein -
  NM966_RS15330 (NM966_15275) degQ 2913975..2914115 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  NM966_RS15335 (NM966_15280) - 2914621..2914974 (+) 354 WP_017367963.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24140.53 Da        Isoelectric Point: 4.5688

>NTDB_id=710310 NM966_RS15310 WP_007500477.1 2909710..2910351(-) (comA) [Bacillus altitudinis strain B12]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEGAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQQTDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=710310 NM966_RS15310 WP_007500477.1 2909710..2910351(-) (comA) [Bacillus altitudinis strain B12]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGGCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATCTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCCAAACAAATTCTAGAAACGAATCAACAAGTGAAAATTATC
ATTTATACAGGATATGAAGTAGATGATTATTTCGAAGAGGCCATTCGAGCTGGATTGCATGGTGCAATAAGTAAAACAGA
GACAAAAGACAAAATCATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGCAGACGGATCATGAGCTGTTAACAGAGCGTGAATGCTTAATC
TTAAGAGAAGTGGAAAAAGGGTACACAAACCAAGAGATCGCCGATGTGCTTCATTTGAGCAAACGCTCGATTGAATACAG
TTTGACCTCCATCTTTAATAAGCTGAATGTTGGATCTCGAACAGAAGCGGTGTTAATTGCAAAATCGGAAAGTGTCCTGT
AA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-207)

Response regulator receiver domain (Response_reg)

(4-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.495

100

0.718