Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NM966_RS07910 Genome accession   NZ_CP101506
Coordinates   1547127..1548029 (+) Length   300 a.a.
NCBI ID   WP_191218857.1    Uniprot ID   -
Organism   Bacillus altitudinis strain B12     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 1542127..1553029
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM966_RS07890 (NM966_07865) - 1542796..1544529 (+) 1734 WP_191218858.1 glycosyltransferase -
  NM966_RS07895 (NM966_07870) - 1544526..1544801 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  NM966_RS07900 (NM966_07875) sucC 1544978..1546138 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  NM966_RS07905 (NM966_07880) sucD 1546161..1547063 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NM966_RS07910 (NM966_07885) dprA 1547127..1548029 (+) 903 WP_191218857.1 DNA-processing protein DprA Machinery gene
  NM966_RS07915 (NM966_07890) topA 1548224..1550299 (+) 2076 WP_017367241.1 type I DNA topoisomerase -
  NM966_RS07920 (NM966_07895) trmFO 1550370..1551674 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NM966_RS07925 (NM966_07900) xerC 1551737..1552654 (+) 918 WP_191218856.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34071.41 Da        Isoelectric Point: 8.2672

>NTDB_id=710291 NM966_RS07910 WP_191218857.1 1547127..1548029(+) (dprA) [Bacillus altitudinis strain B12]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFQHIVQAYLKQNIYM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALDQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELP

Nucleotide


Download         Length: 903 bp        

>NTDB_id=710291 NM966_RS07910 WP_191218857.1 1547127..1548029(+) (dprA) [Bacillus altitudinis strain B12]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
GGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTCAACACATCGTTCAAGCCTATTTAAAGCAAAATATTTACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGTGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCATCCGCCTTATATCAAACCAGAAAAATGGCATT
TCCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGACCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGACTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGTGGTG
TTCAATATACTGAACTCCCATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.355

95.667

0.52
  dprA Lactococcus lactis subsp. cremoris KW2

39.373

95.667

0.377
  dprA Legionella pneumophila strain ERS1305867

36.721

100

0.373