Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   E5Q65_RS09065 Genome accession   NZ_CP116480
Coordinates   1869968..1870705 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain GTEN_24     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1864968..1875705
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  E5Q65_RS09050 clpC 1865422..1867995 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  E5Q65_RS09055 yfiH 1868125..1868856 (-) 732 WP_023155416.1 purine nucleoside phosphorylase YfiH -
  E5Q65_RS09060 rluD 1868853..1869833 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  E5Q65_RS09065 comL 1869968..1870705 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  E5Q65_RS09070 raiA 1870976..1871317 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  E5Q65_RS09075 pheL 1871421..1871468 (+) 48 WP_010723158.1 phe operon leader peptide -
  E5Q65_RS09080 pheA 1871567..1872727 (+) 1161 WP_000200120.1 bifunctional chorismate mutase/prephenate dehydratase -
  E5Q65_RS09085 tyrA 1872770..1873891 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  E5Q65_RS09090 aroF 1873902..1874972 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  E5Q65_RS09095 yfiL 1875181..1875546 (+) 366 WP_024166617.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=710270 E5Q65_RS09065 WP_000197686.1 1869968..1870705(+) (comL) [Escherichia coli strain GTEN_24]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=710270 E5Q65_RS09065 WP_000197686.1 1869968..1870705(+) (comL) [Escherichia coli strain GTEN_24]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376