Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   PJV85_RS08970 Genome accession   NZ_CP116457
Coordinates   1838589..1839695 (+) Length   368 a.a.
NCBI ID   WP_011527822.1    Uniprot ID   Q1JJC0
Organism   Streptococcus pyogenes strain 1095     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1833589..1844695
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PJV85_RS08950 (PJV85_08950) hasA 1834267..1835526 (+) 1260 WP_029714250.1 hyaluronan synthase HasA -
  PJV85_RS08955 (PJV85_08955) hasB 1835562..1836770 (+) 1209 WP_009880737.1 UDP-glucose 6-dehydrogenase HasB -
  PJV85_RS08960 (PJV85_08960) hasC 1836952..1837866 (+) 915 WP_010922799.1 UTP--glucose-1-phosphate uridylyltransferase HasC -
  PJV85_RS08965 (PJV85_08965) yaaA 1838174..1838587 (+) 414 WP_010922800.1 S4 domain-containing protein YaaA -
  PJV85_RS08970 (PJV85_08970) recF 1838589..1839695 (+) 1107 WP_011527822.1 DNA replication/repair protein RecF Machinery gene
  PJV85_RS08975 (PJV85_08975) - 1839750..1840613 (-) 864 WP_002992310.1 GRP family sugar transporter -
  PJV85_RS08980 (PJV85_08980) guaB 1840816..1842297 (-) 1482 WP_002991454.1 IMP dehydrogenase -
  PJV85_RS08985 (PJV85_08985) trpS 1842605..1843627 (-) 1023 WP_011527823.1 tryptophan--tRNA ligase -

Sequence

Protein


Download         Length: 368 a.a.        Molecular weight: 41865.80 Da        Isoelectric Point: 7.8080

>NTDB_id=710243 PJV85_RS08970 WP_011527822.1 1838589..1839695(+) (recF) [Streptococcus pyogenes strain 1095]
MWIKELELKHYRNYDHLLASFSSGLNVFIGNNAQGKTNFLEAIYFLSLTRSHRTRADKELIHFDHSTVSLTGKIQRISGT
VDLEINLSDKGRVTKINALKQAKLSDYIGTMMVVLFAPEDLQLVKGAPSLRRKFIDIDLGQIKPVYLSELSHYNHVLKQR
NSYLKSAQQIDAAFLAVLDEQLASYGARVMEHRIDFINALEKEANTHHQAISNGLESLSLSYQSSVVFDKKTNIYQQFLY
QLEKNHQKDFFRKNTSVGPHRDELAFYINGMNANFASQGQHRSLILSLKMAEVSLMKALTGDNPILLLDDVMSELDNTRQ
TKLLETVIKENVQTFITTTSLDHLSQLPEGIRIFHVTKGTVQIDSDIH

Nucleotide


Download         Length: 1107 bp        

>NTDB_id=710243 PJV85_RS08970 WP_011527822.1 1838589..1839695(+) (recF) [Streptococcus pyogenes strain 1095]
ATGTGGATTAAAGAGTTAGAGTTAAAACATTATCGCAATTATGACCACCTGCTTGCCTCATTTTCGTCGGGTTTAAATGT
CTTTATCGGTAATAATGCTCAAGGAAAAACCAATTTTCTCGAGGCAATCTATTTTCTATCACTTACTAGAAGTCATCGCA
CGAGGGCTGATAAAGAATTGATTCATTTTGATCACTCAACTGTTTCTCTTACTGGTAAGATTCAGCGTATTAGTGGTACT
GTTGATTTAGAAATCAATCTATCAGATAAAGGACGTGTGACAAAGATTAATGCGCTAAAGCAAGCAAAATTATCTGATTA
TATTGGAACGATGATGGTTGTGCTTTTTGCACCAGAAGATTTGCAACTAGTTAAGGGAGCACCTAGCCTTCGTCGCAAAT
TTATCGACATTGACCTTGGTCAAATTAAGCCTGTTTACTTATCTGAGTTATCCCATTATAACCACGTGCTTAAACAGCGT
AATAGCTATTTAAAAAGTGCCCAACAAATTGATGCCGCTTTTCTAGCTGTTCTAGATGAGCAATTAGCTAGCTATGGAGC
CCGTGTCATGGAACATCGTATTGATTTTATCAATGCGTTAGAGAAAGAAGCAAATACTCATCACCAAGCCATCTCAAATG
GTTTAGAAAGTCTCTCTCTCTCCTATCAGTCGTCAGTTGTCTTTGACAAAAAAACTAATATTTACCAACAATTTTTATAC
CAACTTGAAAAAAATCATCAGAAAGATTTCTTCCGTAAAAACACTAGCGTTGGTCCACATCGCGATGAATTAGCCTTTTA
CATTAACGGGATGAATGCTAACTTTGCTAGTCAAGGTCAGCACCGCAGCCTTATCCTTTCCTTAAAAATGGCTGAAGTTA
GTTTAATGAAGGCCTTGACTGGAGATAATCCCATTCTTTTACTAGACGATGTCATGAGCGAGCTAGACAATACACGACAA
ACAAAGTTACTTGAAACAGTAATTAAAGAAAATGTCCAAACCTTTATCACAACAACAAGTTTGGATCACCTGTCACAGTT
GCCAGAAGGTATCCGTATTTTTCACGTGACAAAAGGAACCGTTCAAATTGATTCTGATATTCACTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-360)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1JJC0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

62.568

99.457

0.622
  recF Bacillus subtilis subsp. subtilis str. 168

45.455

100

0.462