Detailed information    

insolico Bioinformatically predicted

Overview

Name   comO   Type   Machinery gene
Locus tag   K6J68_RS00270 Genome accession   NZ_AP018773
Coordinates   56370..57086 (-) Length   238 a.a.
NCBI ID   WP_005655922.1    Uniprot ID   A0A0H3PFM8
Organism   Haemophilus influenzae strain CHBN-III-2 isolate 13H39     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 51370..62086
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J68_RS00250 (CHBNIII2_00500) nrdR 51477..51926 (-) 450 WP_005651549.1 transcriptional regulator NrdR -
  K6J68_RS00255 (CHBNIII2_00510) recC 51981..55346 (-) 3366 WP_005686198.1 exodeoxyribonuclease V subunit gamma -
  K6J68_RS00260 (CHBNIII2_00520) comQ 55392..55679 (-) 288 WP_005655928.1 DUF5374 domain-containing protein Machinery gene
  K6J68_RS00265 (CHBNIII2_00530) comP 55672..56355 (-) 684 WP_005659188.1 DUF2572 family protein Machinery gene
  K6J68_RS00270 (CHBNIII2_00540) comO 56370..57086 (-) 717 WP_005655922.1 type II secretion system protein J Machinery gene
  K6J68_RS00275 (CHBNIII2_00550) comN 57086..57598 (-) 513 WP_005651545.1 type II secretion system protein Machinery gene
  K6J68_RS00280 (CHBNIII2_00560) suhB 57798..58601 (+) 804 WP_005659182.1 inositol-1-monophosphatase -
  K6J68_RS00285 (CHBNIII2_00570) nrfE 58710..60617 (+) 1908 WP_005659178.1 heme lyase NrfEFG subunit NrfE -
  K6J68_RS00290 (CHBNIII2_00580) - 60617..61147 (+) 531 WP_005659175.1 DsbE family thiol:disulfide interchange protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 26734.11 Da        Isoelectric Point: 9.5507

>NTDB_id=71021 K6J68_RS00270 WP_005655922.1 56370..57086(-) (comO) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
MMKVLLKGQTLLALMISLALSSLLLLSISHFYVQIQTQNQQMLLHLKLQAELQRTLQLIGKDLRRLGFRALNAKLTESNL
SLFELDEQGTAIFISQEDNAPPNSCVLFFYDLNKNGCIGKGSPKTCMKKGKNTSKSSTEELFGYKVSNKMIKTKLTYQSV
IPTNCTAETCKRAFQQTACNAGGGWADLLDNNEYEITRLQFNWLIEGKGLEIKLKGNLKQTPNISYETSLVVALWNQK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=71021 K6J68_RS00270 WP_005655922.1 56370..57086(-) (comO) [Haemophilus influenzae strain CHBN-III-2 isolate 13H39]
ATGATGAAAGTATTATTAAAAGGGCAAACCCTATTAGCACTGATGATTTCACTAGCATTGTCGTCTTTATTATTGCTAAG
CATTTCGCATTTTTATGTGCAAATACAAACGCAAAATCAACAGATGTTATTACATTTAAAATTACAAGCTGAATTACAAC
GAACATTACAGTTAATAGGTAAAGATCTTCGCCGATTAGGATTTCGAGCATTAAATGCAAAACTGACGGAAAGCAATTTA
TCTTTATTTGAATTAGATGAACAAGGCACAGCTATTTTTATTAGCCAAGAAGATAATGCGCCACCTAATAGCTGCGTGTT
GTTCTTTTATGATTTAAATAAAAATGGGTGTATTGGCAAAGGTTCGCCGAAAACCTGTATGAAAAAAGGTAAAAATACAT
CTAAAAGTAGTACTGAAGAATTATTCGGCTATAAAGTGAGTAACAAAATGATAAAAACCAAACTGACTTATCAAAGTGTT
ATTCCTACTAATTGCACGGCAGAAACTTGTAAACGTGCTTTTCAACAAACCGCTTGTAACGCTGGTGGTGGATGGGCAGA
TTTATTAGATAACAACGAATATGAAATTACTAGGTTACAATTTAATTGGTTAATTGAAGGCAAAGGATTAGAAATCAAGC
TAAAAGGAAATTTAAAACAAACCCCAAATATCAGTTATGAAACATCCCTTGTTGTTGCACTATGGAATCAAAAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3PFM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comO Haemophilus influenzae Rd KW20

98.739

100

0.987

Multiple sequence alignment