Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMQ06_RS04295 Genome accession   NZ_CP101472
Coordinates   913033..913452 (+) Length   139 a.a.
NCBI ID   WP_255157131.1    Uniprot ID   -
Organism   Staphylococcus equorum strain DX2     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 908033..918452
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMQ06_RS04265 (NMQ06_04260) atpD 908070..909482 (+) 1413 WP_021339775.1 F0F1 ATP synthase subunit beta -
  NMQ06_RS04270 (NMQ06_04265) - 909502..909906 (+) 405 WP_002507082.1 F0F1 ATP synthase subunit epsilon -
  NMQ06_RS04275 (NMQ06_04270) - 910230..910463 (+) 234 WP_002507083.1 DUF1146 family protein -
  NMQ06_RS04280 (NMQ06_04275) murA 910570..911835 (+) 1266 WP_021339774.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NMQ06_RS04285 (NMQ06_04280) fabZ 911893..912333 (+) 441 WP_002507085.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NMQ06_RS04290 (NMQ06_04285) - 912402..912842 (-) 441 WP_002507086.1 YwpF-like family protein -
  NMQ06_RS04295 (NMQ06_04290) ssb 913033..913452 (+) 420 WP_255157131.1 single-stranded DNA-binding protein Machinery gene
  NMQ06_RS04300 (NMQ06_04295) - 913936..914616 (+) 681 WP_002507088.1 transglycosylase family protein -
  NMQ06_RS04305 (NMQ06_04300) tenA 915006..915695 (+) 690 WP_021339938.1 thiaminase II -
  NMQ06_RS04310 (NMQ06_04305) thiD 915688..916509 (+) 822 WP_021339939.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NMQ06_RS04315 (NMQ06_04310) thiM 916502..917293 (+) 792 WP_031266140.1 hydroxyethylthiazole kinase -
  NMQ06_RS04320 (NMQ06_04315) thiE 917293..917931 (+) 639 WP_021339941.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 139 a.a.        Molecular weight: 16268.51 Da        Isoelectric Point: 5.0433

>NTDB_id=710184 NMQ06_RS04295 WP_255157131.1 913033..913452(+) (ssb) [Staphylococcus equorum strain DX2]
MINNIVIVGRLTKDPKIYEKEGKKLATFCVAVNRNYKDKDQNTVCDYLYCKAFGKIADNIEKYINQGSLVGITGQMQSRK
FEKEGQMHFVSEIYIETIKFMSPRTKNETDELFEPFPLEHDHESFNEINIQENDIYEIV

Nucleotide


Download         Length: 420 bp        

>NTDB_id=710184 NMQ06_RS04295 WP_255157131.1 913033..913452(+) (ssb) [Staphylococcus equorum strain DX2]
ATGATAAATAACATCGTCATTGTAGGACGATTAACAAAAGATCCCAAAATTTATGAAAAGGAGGGGAAGAAGTTAGCTAC
CTTTTGTGTCGCAGTAAATAGAAATTATAAAGATAAAGATCAAAATACAGTCTGTGATTATTTGTATTGTAAAGCATTTG
GTAAAATTGCTGACAATATTGAAAAGTATATCAATCAAGGATCACTTGTAGGTATTACTGGACAAATGCAATCACGTAAA
TTTGAAAAAGAAGGACAGATGCATTTTGTATCAGAAATTTATATCGAAACAATTAAATTCATGTCTCCACGAACTAAAAA
TGAAACGGATGAACTTTTTGAACCATTCCCATTAGAGCACGATCATGAATCATTCAACGAAATTAATATTCAAGAAAATG
ATATATACGAAATTGTATAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

60.87

99.281

0.604
  ssb Staphylococcus aureus MW2

60.145

99.281

0.597