Detailed information NTG0710179

Bioinformatically predicted

Overview

• Name: ccrB
• Type: Machinery gene
• Locus tag: NMQ06_RS00190
• Genome accession: NZ_CP101472
• Coordinates: 45492..47120 (-)
• Length: 542 a.a.
• NCBI ID: WP_255156980.1
• Uniprot ID: -
• Organism: Staphylococcus equorum strain DX2
• Function: promote SCCmec transfer (predicted from homology) Homologous recombination

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type	MGE coordinates	Gene coordinates	Relative position	Distance (bp)
SCCmec	47141..48490	45492..47120	flank	21

Gene organization within MGE regions

Location: 45492..48490

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMQ06_RS00190 (NMQ06_00190)	ccrB	45492..47120 (-)	1629	WP_255156980.1	cassette chromosome recombinase CcrB	Machinery gene
NMQ06_RS00195 (NMQ06_00195)	ccrA	47141..48490 (-)	1350	WP_255156982.1	cassette chromosome recombinase CcrA	Machinery gene

Sequence

Protein

• Length: 542 a.a.
• Molecular weight: 62570.45 Da
• Isoelectric Point: 9.5760

>NTDB_id=710179 NMQ06_RS00190 WP_255156980.1 45492..47120(-) (ccrB) [Staphylococcus equorum strain DX2]
MQQLKQKRVGIYVRVSTEMQSAEGYSIDGQINQIKEYCNFHHFEVKDIYADRGISGKSMNRPALQRMLHDANEGHIDCVM
VYKTNRLARNTSDLLKIVEDLHKQNVEFFSLSERMEVNTSSGKLMLQILASFSEFERNNIVENVFMGQTRRAQEGYYQGN
LPLGYDKIPDSKHELMINQHEANIVKYIFESYAKGHGYRKIANALNHKGYVTKKGNPFSINSITYILVNPFYIGKIQFAK
YKDWNEKRRKGLNDKPIIADGKHPPIISQELWDKVQSRKKQVSQKPQVHGKGTNLLTGIIHCPECGAPMAASNTTNTLKD
GTKKRIRYYSCSNFRNKGSKVCSANSVRADVIEKYVMDQILEIVKSDKVLKQVVERVNQDNQVDVAGLNHDIAYKQQQFD
EINTKLKNLIQTIEDNPDLTSALKPTIHQYETQLNDITNQMNQLKQQQNQEKSSYDTKQIAALLQRIFQNIESMDKSQLK
ALYLTVIDRIDIRKDENHKKQFYVTLKLNNEIIKQLFNNIPIDEVLLSTSSLFLPQTLYFQI

Nucleotide

• Length: 1629 bp

>NTDB_id=710179 NMQ06_RS00190 WP_255156980.1 45492..47120(-) (ccrB) [Staphylococcus equorum strain DX2]
ATGCAACAACTCAAACAAAAACGTGTCGGTATCTATGTCCGCGTATCAACAGAAATGCAAAGTGCAGAGGGCTATAGTAT
CGACGGGCAAATCAATCAAATCAAAGAATATTGTAACTTCCATCATTTCGAAGTCAAAGATATATACGCTGATCGTGGTA
TTTCAGGAAAGTCTATGAACCGTCCTGCACTACAACGTATGTTACATGATGCGAATGAAGGTCATATCGATTGTGTCATG
GTGTACAAAACAAACCGATTGGCACGTAATACATCAGACTTACTCAAAATTGTCGAAGATTTGCATAAACAAAATGTTGA
ATTTTTCAGTCTATCTGAACGTATGGAAGTTAATACGAGTAGCGGTAAGCTTATGTTACAAATACTCGCAAGCTTCTCTG
AATTCGAACGCAATAACATTGTAGAAAATGTCTTCATGGGTCAAACGAGACGTGCTCAAGAAGGCTATTATCAAGGCAAT
TTGCCACTAGGATATGATAAAATACCTGATAGTAAGCATGAACTCATGATAAATCAACATGAAGCGAATATCGTGAAATA
TATATTTGAATCTTATGCCAAAGGACATGGTTATCGTAAAATTGCCAATGCCCTAAATCACAAAGGATATGTTACTAAAA
AAGGTAATCCTTTTAGCATTAATTCAATAACCTATATCTTAGTCAATCCATTCTATATTGGTAAAATTCAATTTGCGAAG
TACAAAGATTGGAATGAAAAGCGTCGTAAAGGACTGAATGATAAACCTATTATAGCTGATGGTAAACACCCTCCTATTAT
TAGTCAAGAATTATGGGATAAAGTCCAATCACGCAAAAAACAGGTCAGTCAAAAACCTCAAGTTCATGGAAAAGGAACCA
ATCTATTAACAGGTATTATTCACTGCCCAGAATGTGGTGCACCAATGGCAGCTAGTAACACAACGAACACATTGAAAGAT
GGTACCAAGAAGCGAATACGTTATTATTCTTGTAGTAACTTTCGAAACAAAGGCTCAAAAGTATGTTCTGCGAATAGTGT
TAGAGCCGATGTGATTGAGAAATACGTCATGGATCAAATACTTGAAATTGTCAAAAGCGATAAAGTTCTCAAACAAGTTG
TCGAACGTGTTAATCAAGATAATCAAGTCGATGTAGCTGGACTCAATCATGATATTGCCTATAAGCAACAACAATTTGAT
GAAATAAACACTAAACTAAAAAATCTAATTCAGACCATCGAAGACAATCCAGACTTAACATCTGCACTCAAACCAACCAT
TCATCAATATGAAACACAACTCAATGACATTACAAACCAAATGAATCAACTCAAGCAGCAACAAAATCAAGAGAAATCAT
CTTATGATACGAAACAAATCGCTGCCCTATTACAACGAATATTTCAAAATATAGAATCCATGGATAAATCACAGCTAAAA
GCTTTGTACCTAACGGTTATTGACCGTATTGATATTCGTAAAGATGAGAATCATAAAAAGCAATTCTATGTCACTCTCAA
GCTCAATAATGAAATTATTAAACAACTTTTCAATAATATCCCTATCGACGAAGTGCTCCTCAGCACTTCGTCTTTGTTTT
TGCCTCAAACACTCTACTTTCAAATCTAA

Domains

Predicted by InterproScan.

• Resolvase, N terminal domain (Resolvase) (11-156)

• Recombinase (Recombinase) (180-280)

• Ogr/Delta-like zinc finger (Ogr_Delta) (301-356)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
ccrB	Staphylococcus aureus N315	86.716	100	0.867