Detailed information    

insolico Bioinformatically predicted

Overview

Name   rec2   Type   Machinery gene
Locus tag   K6J58_RS05045 Genome accession   NZ_AP018772
Coordinates   1019479..1021845 (+) Length   788 a.a.
NCBI ID   WP_005687515.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-1 isolate 15H02     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1014479..1026845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J58_RS05020 (CHBNIII1_09450) - 1014827..1016125 (-) 1299 WP_005657733.1 N-acetylmuramoyl-L-alanine amidase -
  K6J58_RS05025 (CHBNIII1_09460) tsaE 1016133..1016609 (-) 477 WP_005657736.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  K6J58_RS05030 (CHBNIII1_09470) folK 1016685..1017167 (-) 483 WP_005657739.1 2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase -
  K6J58_RS05035 (CHBNIII1_09480) pcnB 1017176..1018534 (-) 1359 WP_005657742.1 polynucleotide adenylyltransferase PcnB -
  K6J58_RS05040 (CHBNIII1_09490) dksA 1018782..1019219 (-) 438 WP_005657744.1 RNA polymerase-binding protein DksA -
  K6J58_RS05045 (CHBNIII1_09500) rec2 1019479..1021845 (+) 2367 WP_005687515.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  K6J58_RS05050 (CHBNIII1_09510) msbA 1021886..1023649 (+) 1764 WP_005687513.1 lipid A ABC transporter ATP-binding protein/permease MsbA -
  K6J58_RS05055 (CHBNIII1_09520) lpxK 1023722..1024720 (+) 999 WP_005687511.1 tetraacyldisaccharide 4'-kinase -
  K6J58_RS05060 (CHBNIII1_09530) kdsB 1024791..1025555 (+) 765 WP_005687509.1 3-deoxy-manno-octulosonate cytidylyltransferase -

Sequence

Protein


Download         Length: 788 a.a.        Molecular weight: 89356.86 Da        Isoelectric Point: 10.0542

>NTDB_id=71012 K6J58_RS05045 WP_005687515.1 1019479..1021845(+) (rec2) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
MKLNLITLAVLLIVADLTLLFLPQPLLLPWQVAFVIALVLIFLFIFLRRNFLVSLAFFVASLGYFHYSALSLLQQAQNIT
AQKQVVTFKIQEILHQQDYQTLIATATLANNLQEQRIFLNWKAKEVPQLSEIWQAEISLRPLSARLNFGGFDRQQWYFSK
GITAVGTVKSAVKIADVSSLRAEKLQQVKKQTEGLSLQGLLIALAFGERAWLDKTTWSIYQQTNTAHLIAISGLHIGLAM
GIGFCLVRVVQVFFPTRFIHPYFPLVFGVLFALIYAYLAGFSVPTFRAISALVFVLFIQIMRRHYSPIQLFTVVVGFLLF
CDPLMPLSVSFWLSCGAVGCLILWYRYVPFSLFQWKNRPFSPKVRWILSLFHLQFGLLLFFTPLQLFLFNGLSLSGFLAN
LMAVPIYSFLLVPLILFAVFTNGTMFSWQLANKLAEGSTGLISVFQGNWFNVSFNLALVLTALCAGIFMLIIWRIYREPE
VSSSTWKIKRPRFFTLNLSKPLLKNERINVLRCSFGIILLCFTILLFKQFSKSTWQVDTLDVGQGLATLIVKNGKGILYD
TGSSWRGGSMAELEILPYLQREGIVLEKLILSHDDNDHAGGASTILKAYPNVELITPSQKNYGENYRTFCTAGRDWHWQG
LHFQILSPHNVVTRADNPHSCVILVDDGKHSVLLTGDAEAKNEQIFARALGKIDVLQVGHHGSKTSTSEHLLSQVRPDVA
IISSGRWNPWKFPHYSVMERLHRYKSAVENTAVSGQVRVNFFQDRLEIQQARTKFSPWYARVIGLSKE

Nucleotide


Download         Length: 2367 bp        

>NTDB_id=71012 K6J58_RS05045 WP_005687515.1 1019479..1021845(+) (rec2) [Haemophilus influenzae strain CHBN-III-1 isolate 15H02]
ATGAAATTAAACTTAATAACTTTAGCTGTCTTGTTAATTGTCGCGGATTTAACGTTGTTATTTCTACCGCAACCGTTGCT
ATTGCCTTGGCAAGTTGCTTTCGTTATTGCGCTTGTTTTGATTTTTCTTTTTATTTTCTTGCGTAGAAATTTCTTAGTTA
GCCTTGCTTTTTTTGTTGCCTCTCTTGGCTATTTTCATTATTCGGCTTTGAGTTTATTACAACAAGCGCAAAATATTACC
GCTCAAAAGCAAGTGGTAACTTTTAAGATTCAAGAAATTTTGCACCAACAGGATTATCAAACGCTTATCGCCACAGCAAC
ATTGGCGAATAATTTGCAAGAACAACGAATTTTCTTAAATTGGAAAGCGAAAGAGGTGCCTCAATTATCGGAAATTTGGC
AAGCTGAAATTTCTTTACGTCCCCTTTCTGCACGATTAAATTTTGGTGGGTTTGATCGGCAACAATGGTATTTTTCAAAA
GGAATTACGGCTGTTGGAACGGTAAAAAGTGCGGTGAAAATTGCGGATGTTTCATCATTGCGAGCAGAAAAATTGCAACA
AGTGAAAAAACAAACAGAAGGGTTGTCCTTACAAGGTTTATTGATTGCCTTAGCTTTTGGCGAACGGGCTTGGTTAGATA
AAACCACTTGGTCAATTTACCAACAAACCAATACCGCACATCTTATTGCTATTTCTGGCTTACATATTGGGTTGGCTATG
GGAATTGGATTTTGCTTGGTGCGTGTTGTGCAAGTATTTTTCCCCACCCGTTTTATTCATCCTTATTTTCCTTTAGTTTT
TGGTGTTTTATTTGCTTTAATTTATGCGTATTTGGCTGGTTTTAGCGTGCCAACTTTTCGTGCCATTTCAGCACTTGTTT
TCGTTTTATTTATTCAAATAATGAGGCGACATTATTCGCCCATTCAGCTTTTTACGGTGGTTGTCGGATTCTTGCTTTTC
TGCGATCCATTAATGCCGCTTTCGGTCAGTTTTTGGCTTTCTTGTGGTGCAGTTGGGTGTTTGATCCTCTGGTATCGTTA
TGTGCCTTTTTCTCTTTTTCAATGGAAAAATCGCCCCTTTTCACCAAAAGTGCGGTGGATTTTGAGTTTATTTCATTTGC
AATTTGGGTTATTGCTTTTTTTTACACCTTTGCAACTTTTTCTATTTAATGGCTTATCGCTGAGTGGATTTTTAGCCAAT
CTTATGGCGGTTCCAATTTATAGTTTTTTGCTTGTGCCATTAATTTTATTTGCCGTTTTTACTAACGGCACAATGTTTTC
TTGGCAACTAGCAAACAAGTTAGCCGAAGGAAGTACTGGGTTAATTTCTGTTTTTCAAGGGAATTGGTTTAATGTTTCAT
TTAATTTAGCATTGGTTTTAACCGCACTTTGTGCAGGAATTTTTATGTTAATTATTTGGCGTATTTATCGAGAACCAGAG
GTTTCATCATCAACTTGGAAAATTAAACGACCAAGATTTTTTACATTGAATCTCAGTAAACCTTTGCTAAAAAATGAACG
AATCAACGTTTTGCGATGTTCTTTCGGCATTATCTTACTGTGTTTTACGATTTTGTTGTTTAAACAATTTAGTAAGTCAA
CTTGGCAGGTAGATACTTTAGATGTGGGGCAGGGCTTGGCAACGCTGATTGTGAAAAATGGCAAAGGGATTCTTTATGAT
ACGGGTTCTTCTTGGCGAGGTGGAAGTATGGCTGAGTTGGAAATTTTGCCTTATTTACAAAGAGAAGGGATTGTTTTGGA
AAAATTGATTTTAAGCCACGACGATAACGATCACGCAGGTGGTGCTTCAACAATTTTAAAGGCGTATCCCAATGTGGAAT
TAATTACCCCTTCGCAAAAAAATTATGGGGAAAATTACCGCACTTTTTGTACTGCTGGGCGTGATTGGCATTGGCAAGGG
TTGCATTTTCAAATACTTTCTCCTCACAACGTTGTGACACGAGCTGATAATCCCCATTCTTGTGTAATTTTAGTCGATGA
TGGAAAGCATAGCGTTTTGCTAACTGGCGACGCTGAAGCAAAAAATGAGCAAATTTTTGCCCGCGCTTTAGGCAAAATCG
ATGTGTTGCAAGTGGGGCATCATGGGAGTAAAACATCAACAAGTGAACACTTGCTTTCTCAGGTTAGACCAGATGTAGCG
ATTATTTCTAGTGGGCGTTGGAATCCGTGGAAATTCCCTCATTATTCGGTTATGGAAAGGCTTCATCGCTATAAAAGTGC
GGTAGAAAATACCGCTGTTTCGGGGCAAGTGCGGGTAAATTTTTTTCAAGACCGATTAGAAATCCAGCAAGCTCGCACAA
AATTTTCCCCTTGGTATGCGCGTGTAATTGGATTATCAAAGGAATAA

Domains

Predicted by InterproScan.

Competence protein (Competence)

(204-473)

Metallo-beta-lactamase superfamily (Lactamase_B)

(541-725)

Domain of unknown function (DUF4131) (DUF4131)

(29-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rec2 Haemophilus influenzae Rd KW20

96.447

100

0.964

Multiple sequence alignment