Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   NM232_RS18770 Genome accession   NZ_CP101399
Coordinates   3516782..3517684 (+) Length   300 a.a.
NCBI ID   WP_255233782.1    Uniprot ID   -
Organism   Bacillus altitudinis strain HM-7     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 3511782..3522684
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NM232_RS18750 - 3512451..3514184 (+) 1734 WP_255233781.1 glycosyltransferase -
  NM232_RS18755 - 3514181..3514456 (+) 276 WP_008344827.1 FlhB-like flagellar biosynthesis protein -
  NM232_RS18760 sucC 3514633..3515793 (+) 1161 WP_008344824.1 ADP-forming succinate--CoA ligase subunit beta -
  NM232_RS18765 sucD 3515816..3516718 (+) 903 WP_007499624.1 succinate--CoA ligase subunit alpha -
  NM232_RS18770 dprA 3516782..3517684 (+) 903 WP_255233782.1 DNA-processing protein DprA Machinery gene
  NM232_RS18775 topA 3517878..3519953 (+) 2076 WP_046526653.1 type I DNA topoisomerase -
  NM232_RS18780 trmFO 3520024..3521328 (+) 1305 WP_007499618.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  NM232_RS18785 xerC 3521391..3522308 (+) 918 WP_007499616.1 tyrosine recombinase XerC -

Sequence

Protein


Download         Length: 300 a.a.        Molecular weight: 34063.44 Da        Isoelectric Point: 8.5961

>NTDB_id=710020 NM232_RS18770 WP_255233782.1 3516782..3517684(+) (dprA) [Bacillus altitudinis strain HM-7]
MYNVSERMIFHRLKGLISPSLLTKWWKVDPELYINEETHHFKQDRSLQKIDFTRLQQAEENEFPIFKHIVQAYLKQNIHM
IPITSPLYPSSLKHIYDPPPVLFLKGNVTYLNEEKSLGVVGTRVPSSYGEACVKKIVGELVEEDWMIVSGLAKGIDGLAH
KECIRKKGKTIGVVAGGFQHVYPKEHVQMAQYMGEHHLLLSEHPPYIKPEKWHFPMRNRLISALTRGTIVVQCKEKSGSL
ITAYQALEQGKEVFAVAGSIFDSNSIGPARLIQQGAKLVHSTKDILEEFSLSGVQYTELT

Nucleotide


Download         Length: 903 bp        

>NTDB_id=710020 NM232_RS18770 WP_255233782.1 3516782..3517684(+) (dprA) [Bacillus altitudinis strain HM-7]
ATGTACAACGTGTCCGAAAGAATGATTTTTCACCGCTTAAAAGGCCTCATCTCACCCTCTTTGTTAACAAAATGGTGGAA
AGTCGATCCTGAGCTATATATAAATGAAGAAACACATCATTTCAAACAGGATCGATCATTACAAAAGATCGACTTTACCC
GCTTACAACAAGCTGAAGAAAATGAATTCCCCATTTTTAAACACATCGTTCAAGCCTATTTAAAGCAAAATATTCACATG
ATTCCCATCACATCACCTTTATATCCCAGCTCACTAAAACACATTTATGATCCTCCCCCAGTATTATTCCTAAAAGGAAA
CGTTACCTATTTAAATGAAGAAAAAAGTTTAGGTGTAGTAGGTACACGAGTGCCATCCTCTTATGGAGAAGCGTGCGTGA
AGAAAATTGTTGGAGAACTTGTAGAGGAAGATTGGATGATTGTGAGCGGTTTAGCAAAAGGAATTGATGGACTTGCACAC
AAAGAGTGCATAAGAAAAAAAGGAAAAACGATTGGTGTTGTAGCTGGCGGCTTTCAACATGTATATCCAAAAGAACATGT
GCAAATGGCTCAATATATGGGAGAACATCATTTACTGTTGTCAGAGCACCCGCCTTATATCAAACCAGAAAAATGGCATT
TTCCAATGAGAAACCGATTAATTAGTGCCCTGACAAGAGGAACCATCGTGGTCCAGTGCAAAGAAAAGAGCGGTTCGCTT
ATTACAGCCTACCAGGCATTAGAGCAAGGAAAAGAAGTGTTTGCTGTTGCAGGATCGATCTTTGATTCTAATTCTATAGG
TCCAGCTAGATTGATTCAGCAAGGTGCCAAGCTTGTTCATTCAACGAAGGATATTTTAGAGGAATTCTCCTTGAGCGGTG
TTCAATATACTGAACTCACATAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(75-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Bacillus subtilis subsp. subtilis str. 168

54.704

95.667

0.523
  dprA Legionella pneumophila strain ERS1305867

37.377

100

0.38
  dprA Lactococcus lactis subsp. cremoris KW2

39.721

95.667

0.38