Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   PFZ59_RS09315 Genome accession   NZ_CP116393
Coordinates   1848269..1849339 (-) Length   356 a.a.
NCBI ID   WP_044683310.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1843269..1854339
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS09290 (PFZ59_09290) - 1844389..1844628 (+) 240 WP_208572645.1 DUF6290 family protein -
  PFZ59_RS09295 (PFZ59_09295) - 1844618..1844875 (+) 258 WP_024410064.1 type II toxin-antitoxin system RelE/ParE family toxin -
  PFZ59_RS09300 (PFZ59_09300) braR 1844914..1845582 (+) 669 WP_208582667.1 response regulator transcription factor Regulator
  PFZ59_RS09305 (PFZ59_09305) - 1845579..1846520 (+) 942 WP_208582669.1 sensor histidine kinase -
  PFZ59_RS09310 (PFZ59_09310) - 1846697..1848205 (+) 1509 WP_208582671.1 phosphomannomutase/phosphoglucomutase -
  PFZ59_RS09315 (PFZ59_09315) xerS 1848269..1849339 (-) 1071 WP_044683310.1 tyrosine recombinase XerS Machinery gene
  PFZ59_RS09320 (PFZ59_09320) - 1849687..1851534 (-) 1848 WP_277696907.1 zinc-ribbon domain-containing protein -
  PFZ59_RS09325 (PFZ59_09325) - 1851545..1852246 (-) 702 WP_277696908.1 hypothetical protein -
  PFZ59_RS09330 (PFZ59_09330) - 1852239..1853900 (-) 1662 WP_277696909.1 hypothetical protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41607.78 Da        Isoelectric Point: 9.3408

>NTDB_id=709890 PFZ59_RS09315 WP_044683310.1 1848269..1849339(-) (xerS) [Streptococcus suis strain SS/UPM/MY/F001]
MRRELLLEKIDQLKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFFEWLQDSDLVTVERIADIPLDVLEHLTKKDME
SFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVKLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=709890 PFZ59_RS09315 WP_044683310.1 1848269..1849339(-) (xerS) [Streptococcus suis strain SS/UPM/MY/F001]
ATGAGACGCGAGTTATTATTGGAAAAAATTGATCAACTGAAGGAAATTATGCCTTGGTATGTTCTGGAATATTATCAGTC
AAAGCTGTCTGTTCCTTACAGTTTTACCACCTTATATGAATACTTGAAAGAATACCGTCGATTTTTTGAGTGGTTACAGG
ATTCAGATTTGGTGACTGTTGAACGGATTGCTGACATTCCGCTGGATGTTCTGGAACATTTGACAAAAAAAGATATGGAG
TCCTTTATTCTATATCTGCGAGAGCGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACCCTCTCGGCCCTATCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAAAATGAGCAGGGCGAGCCCTACTTCT
ACCGTAACGTCATGAAGAAGGTGTCGACCAAGAAGAAAAAGGAAACTTTGGCAGCGCGGGCGGAGAACATAAAGCAAAAG
CTATTTTTGGGCGATGAAACGATGGAGTTCTTGGACTATGTCGATAAAGAATATCAGGTAAAGTTATCCAAACGTGCCCT
CTCATCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCACTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGACCTTCGAGATGTAAACCTCAATATGATGATTATCGAAGTAACCCGTAAGGGGGGTAAGCGGGACTCG
GTTAATGTGGCTGGGTTTGCTAAGCCCTATCTGGAAGCCTATATGAGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACAGCCTTCTTCTTGTCTGAATACCGTGGTCTGCCCAATCGTATCGACGCTTCTTCTATCGAAAAAATGGTGGCCA
AGTATTCTGCGGACTTCAAGATACGTGTGACACCCCACAAACTCCGTCACACGCTGGCAACACGGCTCTACGACGCCACC
AAGTCGCAAGTTCTGGTCAGTCATCAGCTGGGTCACGCCAATACCCAGGTCACCGACCTCTATACCCACATCGTCAACGA
TGAGCAGAAAAATGCTCTTGATCAGTTGTGA

Domains

Predicted by InterProScan.

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)

Phage integrase family (Phage_integrase)

(190-344)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

83.427

100

0.834