Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   PFZ59_RS09300 Genome accession   NZ_CP116393
Coordinates   1844914..1845582 (+) Length   222 a.a.
NCBI ID   WP_208582667.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1839914..1850582
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS09270 (PFZ59_09270) - 1840880..1841020 (+) 141 WP_032513066.1 hypothetical protein -
  PFZ59_RS09275 (PFZ59_09275) - 1841033..1841422 (+) 390 WP_208582214.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  PFZ59_RS09280 (PFZ59_09280) - 1841431..1842183 (+) 753 WP_024407069.1 ABC transporter ATP-binding protein -
  PFZ59_RS09285 (PFZ59_09285) - 1842184..1844154 (+) 1971 WP_208582211.1 ABC transporter permease -
  PFZ59_RS09290 (PFZ59_09290) - 1844389..1844628 (+) 240 WP_208572645.1 DUF6290 family protein -
  PFZ59_RS09295 (PFZ59_09295) - 1844618..1844875 (+) 258 WP_024410064.1 type II toxin-antitoxin system RelE/ParE family toxin -
  PFZ59_RS09300 (PFZ59_09300) braR 1844914..1845582 (+) 669 WP_208582667.1 response regulator transcription factor Regulator
  PFZ59_RS09305 (PFZ59_09305) - 1845579..1846520 (+) 942 WP_208582669.1 sensor histidine kinase -
  PFZ59_RS09310 (PFZ59_09310) - 1846697..1848205 (+) 1509 WP_208582671.1 phosphomannomutase/phosphoglucomutase -
  PFZ59_RS09315 (PFZ59_09315) xerS 1848269..1849339 (-) 1071 WP_044683310.1 tyrosine recombinase XerS Machinery gene

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25539.33 Da        Isoelectric Point: 4.7677

>NTDB_id=709889 PFZ59_RS09300 WP_208582667.1 1844914..1845582(+) (braR) [Streptococcus suis strain SS/UPM/MY/F001]
MMKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFI
SSSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKSTDLSIDQFQLSLDGRFSSESEQVQLSPTETKIL
STLLERQGQIVSKDELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFDRIHTVRGVGYLVK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=709889 PFZ59_RS09300 WP_208582667.1 1844914..1845582(+) (braR) [Streptococcus suis strain SS/UPM/MY/F001]
ATGATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATCGTCCAACTCTTGAAGCAGCATTTGGGAAAATC
TTATCAGGTAGAAAGTGTTCAGAATTTCCGAGCTGTCAGTCAGGAAGTGGCGGAAATCAAACCAGACTTGGTGCTGATGG
ACATTAGCCTACCCTATTATAACGGCTTTTATTGGACAACGGAAATCCGTAAAACCATGACCATGCCCATTATCTTTATC
TCCTCTAGCGATGACGAGATGAATGCGGTCATGGCTATGAACATGGGAGGCGATGATTTTGTTTCTAAGCCTTTTTCACT
GGGAATTTTAGATGCCAAAATCGGCGCCTTCTTACGTCGAGTCAATCAATTCAGCAAATCAACTGACTTGTCGATCGACC
AGTTCCAGCTTAGTTTGGATGGGCGTTTTTCAAGCGAATCGGAACAGGTTCAATTGTCTCCTACAGAAACCAAGATTTTA
TCCACCTTACTAGAACGACAAGGGCAGATTGTCAGTAAGGATGAACTCTTGGAAAAACTCTGGGAGAATGAAGAATTTAT
CGACCAGAATACCCTCAATGTCAACATGACTCGTCTGCGTAAGAAGGTGAGTGAAGTGGGATTCGACCGTATTCATACTG
TTCGTGGCGTGGGGTACCTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-220)

Response regulator receiver domain (Response_reg)

(7-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.727

99.099

0.473