Detailed information    

insolico Bioinformatically predicted

Overview

Name   uvrC   Type   Machinery gene
Locus tag   PFZ59_RS08805 Genome accession   NZ_CP116393
Coordinates   1749481..1751250 (+) Length   589 a.a.
NCBI ID   WP_208582373.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1744481..1756250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS08785 (PFZ59_08785) ldcB 1745366..1746121 (+) 756 WP_208582379.1 LD-carboxypeptidase LdcB/DacB -
  PFZ59_RS08790 (PFZ59_08790) - 1746210..1746653 (+) 444 WP_208582377.1 VOC family protein -
  PFZ59_RS08795 (PFZ59_08795) - 1746676..1748286 (-) 1611 WP_277696869.1 permease -
  PFZ59_RS08800 (PFZ59_08800) - 1748283..1749026 (-) 744 WP_029186612.1 ABC transporter ATP-binding protein -
  PFZ59_RS08805 (PFZ59_08805) uvrC 1749481..1751250 (+) 1770 WP_208582373.1 excinuclease ABC subunit UvrC Machinery gene
  PFZ59_RS08815 (PFZ59_08815) - 1752517..1752678 (+) 162 WP_277696870.1 hypothetical protein -
  PFZ59_RS08820 (PFZ59_08820) - 1752850..1752978 (+) 129 WP_002943675.1 DUF4044 domain-containing protein -
  PFZ59_RS08825 (PFZ59_08825) obgE 1753183..1754496 (+) 1314 WP_032504854.1 GTPase ObgE -
  PFZ59_RS08830 (PFZ59_08830) - 1754757..1754921 (+) 165 WP_014638044.1 hypothetical protein -

Sequence

Protein


Download         Length: 589 a.a.        Molecular weight: 67693.88 Da        Isoelectric Point: 9.1627

>NTDB_id=709884 PFZ59_RS08805 WP_208582373.1 1749481..1751250(+) (uvrC) [Streptococcus suis strain SS/UPM/MY/F001]
MNDLIKHKLELLPDSPGCYLHKNKYGKIIYVGKAKNLRNRVRSYFRGAHDTKTEALVSEIADFEFIVTDSNIEALLLEIN
LIQENKPRYNIMLKDDKSYPFIKITKERHPRLLITRQIKKDGGQYFGPYPDVGAANQTLKLLERLYPFRKCKLPENKYCL
YYHLGQCLAHGENMPSLSDYDKMAKEVAQFLTGHDDKIVKEVQDKMKAAAGNLEFEKAAEYRDVLQSISTLRTKQRVMAH
DLQNRDVFGYYVDKGWMCVQVFFVRQGKLIERNVNLFPYYNDADEDFLTYIGQFYRDQQHLIPSEVLIPQDIDQEAVEAL
VDTKVLKPQRGEKKQLINLATKNARVSLEQKFNLLEKNLEKTYGAVENIGQLLGIPTPVRIEAFDNSNIMGTSPVSAMVV
FENGVPNKKEYRKYKIKTVEGPDDYASMREVLQRRYSRVLRDGLTPPDLIIIDGGQGQVNVAKQVIEQELGMSIPIAGLQ
KNDKHQTHELLFGNPLEVVELPRNSQEFFLLHRIQDEVHRFAIEFHRQVRSKNSFSSKLDGIEGLGPKRKQALMKHFKSI
GNIQSASLQEIAEAGVPYKVAELVKEKLK

Nucleotide


Download         Length: 1770 bp        

>NTDB_id=709884 PFZ59_RS08805 WP_208582373.1 1749481..1751250(+) (uvrC) [Streptococcus suis strain SS/UPM/MY/F001]
ATGAACGATTTGATCAAGCATAAGTTGGAGTTGCTGCCGGACAGTCCGGGTTGCTACCTCCATAAAAACAAGTATGGAAA
GATTATCTATGTGGGCAAGGCCAAAAACCTGCGCAATCGGGTGCGGTCTTATTTTCGTGGTGCCCATGATACCAAGACAG
AGGCATTAGTATCTGAAATTGCCGACTTTGAGTTTATCGTGACGGATTCCAATATCGAGGCCCTCTTGCTGGAAATCAAT
CTGATTCAGGAAAATAAGCCTCGCTATAACATTATGCTCAAGGATGACAAGTCCTATCCCTTTATCAAGATTACCAAGGA
ACGTCATCCACGGCTGCTCATTACACGGCAGATAAAAAAAGATGGCGGTCAGTATTTTGGTCCCTATCCAGATGTGGGTG
CGGCCAACCAGACCCTCAAACTGCTGGAACGCCTCTATCCTTTCCGCAAGTGTAAATTGCCTGAGAACAAGTATTGTCTT
TATTATCATTTGGGGCAATGTCTGGCCCATGGAGAAAACATGCCCAGCCTGTCTGACTATGACAAGATGGCTAAGGAAGT
GGCCCAGTTCTTGACAGGGCATGATGATAAGATTGTCAAGGAAGTCCAGGACAAGATGAAAGCTGCTGCTGGCAATTTGG
AATTTGAAAAGGCTGCAGAATACCGAGATGTCCTGCAATCCATTTCCACCCTGCGGACCAAGCAACGTGTGATGGCTCAT
GACTTGCAGAATCGGGATGTCTTTGGCTACTATGTGGACAAGGGCTGGATGTGTGTGCAGGTTTTCTTTGTTCGGCAGGG
GAAACTGATTGAGCGGAATGTCAATCTTTTTCCATACTACAATGATGCGGACGAAGACTTTTTGACCTACATCGGTCAGT
TTTACAGGGACCAGCAACATTTGATTCCCTCAGAGGTCTTGATACCGCAGGATATTGACCAAGAAGCCGTAGAAGCTCTG
GTGGATACCAAGGTGCTTAAGCCCCAGCGTGGCGAGAAGAAGCAACTCATCAATCTGGCGACCAAGAATGCGCGTGTTAG
TCTGGAGCAGAAGTTTAATCTGTTGGAGAAAAATCTGGAGAAGACCTACGGTGCGGTGGAGAATATCGGTCAGCTTTTGG
GGATTCCGACGCCTGTGCGGATTGAGGCTTTTGATAACTCCAATATCATGGGGACCAGTCCTGTGTCGGCTATGGTGGTC
TTTGAAAATGGGGTGCCTAATAAAAAGGAATACCGCAAGTATAAGATTAAGACGGTGGAGGGGCCAGACGATTATGCTTC
CATGCGAGAAGTTTTACAGCGGCGTTACAGTCGGGTGCTGCGGGACGGTTTGACACCGCCTGATTTGATTATCATCGATG
GTGGTCAGGGCCAGGTCAATGTCGCCAAGCAGGTGATTGAGCAGGAGTTGGGTATGTCCATTCCCATTGCAGGTTTACAG
AAGAATGACAAGCACCAGACCCACGAGTTGCTTTTTGGTAATCCATTGGAAGTAGTTGAGTTACCTCGCAATTCACAGGA
ATTTTTCCTCCTGCATCGGATTCAAGATGAAGTGCACCGCTTTGCTATTGAGTTTCACCGGCAGGTTCGGTCAAAAAATT
CCTTCTCATCCAAATTGGACGGCATAGAGGGCTTGGGACCAAAACGCAAACAGGCTCTGATGAAGCATTTCAAGTCTATT
GGCAATATCCAGTCAGCAAGCTTGCAGGAAATCGCAGAAGCTGGTGTGCCGTATAAGGTGGCGGAGTTGGTCAAGGAAAA
GTTGAAGTAA

Domains

Predicted by InterProScan.

UvrB/uvrC motif (UVR)

(196-229)

GIY-YIG catalytic domain (GIY-YIG)

(17-90)

UvrC RNAse H endonuclease domain (UvrC_RNaseH_dom)

(372-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  uvrC Streptococcus pneumoniae TIGR4

77.891

99.83

0.778
  uvrC Streptococcus pneumoniae R6

77.551

99.83

0.774
  uvrC Streptococcus pneumoniae D39

77.551

99.83

0.774