Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   PFZ59_RS06945 Genome accession   NZ_CP116393
Coordinates   1362040..1362690 (+) Length   216 a.a.
NCBI ID   WP_277696682.1    Uniprot ID   -
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1357040..1367690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS06930 (PFZ59_06930) - 1357476..1358561 (-) 1086 WP_208582702.1 Xaa-Pro peptidase family protein -
  PFZ59_RS06935 (PFZ59_06935) ccpA 1358771..1359775 (+) 1005 WP_004298830.1 catabolite control protein A Regulator
  PFZ59_RS06940 (PFZ59_06940) - 1360082..1361086 (+) 1005 WP_277696681.1 IS5 family transposase -
  PFZ59_RS06945 (PFZ59_06945) scnR 1362040..1362690 (+) 651 WP_277696682.1 response regulator transcription factor Regulator
  PFZ59_RS06950 (PFZ59_06950) - 1362691..1363875 (+) 1185 WP_277696683.1 HAMP domain-containing sensor histidine kinase -
  PFZ59_RS06955 (PFZ59_06955) - 1364264..1364935 (+) 672 WP_277696684.1 hypothetical protein -
  PFZ59_RS06960 (PFZ59_06960) - 1365888..1366889 (-) 1002 WP_277696685.1 hypothetical protein -

Sequence

Protein


Download         Length: 216 a.a.        Molecular weight: 24628.74 Da        Isoelectric Point: 4.9774

>NTDB_id=709871 PFZ59_RS06945 WP_277696682.1 1362040..1362690(+) (scnR) [Streptococcus suis strain SS/UPM/MY/F001]
MAKILVLEDDLVINQVVCEFLRDSGHDVLPLFDGGQALEEIQKMEFDLLILDIMVPTMTGLELLTAVRKISSVPVLVLTA
LSDEYTQLISFNQDISDFVTKPFSPLVLMKRIENILKVKHVDETIRIGDILIDQQAGYVHVGEQEVQLTKKEYEVFLYLA
KRKGNFVSRDNLMMGIWGYTELDSRVLDNHIKNIRKKLPSLHLKTVVGRGYQIEEG

Nucleotide


Download         Length: 651 bp        

>NTDB_id=709871 PFZ59_RS06945 WP_277696682.1 1362040..1362690(+) (scnR) [Streptococcus suis strain SS/UPM/MY/F001]
ATGGCAAAAATTTTAGTATTAGAAGATGATTTAGTTATTAATCAGGTAGTCTGTGAATTTTTAAGAGATAGTGGTCACGA
TGTTTTACCTCTATTTGATGGTGGACAGGCATTAGAAGAAATCCAGAAAATGGAATTTGATCTGCTTATTTTGGATATTA
TGGTGCCGACGATGACAGGATTGGAGTTATTGACAGCAGTTCGGAAAATTTCATCTGTTCCAGTATTGGTTTTGACTGCT
TTAAGTGATGAGTATACTCAATTAATTAGCTTTAATCAGGATATAAGTGATTTTGTGACAAAGCCGTTTTCACCTCTTGT
TTTAATGAAGAGAATTGAAAATATTTTAAAAGTAAAACATGTGGATGAGACTATACGAATAGGTGACATCCTTATTGATC
AACAGGCTGGCTATGTTCATGTAGGGGAGCAGGAAGTACAGTTAACGAAGAAAGAGTATGAGGTCTTCCTCTACTTGGCA
AAAAGAAAAGGTAATTTTGTGAGTCGAGATAATCTAATGATGGGAATTTGGGGGTATACAGAATTGGATAGTCGTGTGTT
AGATAATCATATTAAAAATATTCGTAAAAAGTTGCCTAGCTTACACTTAAAAACGGTAGTTGGTCGTGGTTACCAAATTG
AAGAGGGTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-113)

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(144-213)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

36.486

100

0.375