Detailed information    

insolico Bioinformatically predicted

Overview

Name   ccpA   Type   Regulator
Locus tag   PFZ59_RS06935 Genome accession   NZ_CP116393
Coordinates   1358771..1359775 (+) Length   334 a.a.
NCBI ID   WP_004298830.1    Uniprot ID   A0A0H3MYC9
Organism   Streptococcus suis strain SS/UPM/MY/F001     
Function   regulate comCDE transcription and transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1353771..1364775
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFZ59_RS06915 (PFZ59_06915) - 1353998..1354438 (+) 441 WP_277696679.1 CoA-binding protein -
  PFZ59_RS06920 (PFZ59_06920) - 1354732..1355574 (-) 843 WP_277696680.1 DUF975 family protein -
  PFZ59_RS06925 (PFZ59_06925) tgt 1355895..1357037 (+) 1143 WP_208582704.1 tRNA guanosine(34) transglycosylase Tgt -
  PFZ59_RS06930 (PFZ59_06930) - 1357476..1358561 (-) 1086 WP_208582702.1 Xaa-Pro peptidase family protein -
  PFZ59_RS06935 (PFZ59_06935) ccpA 1358771..1359775 (+) 1005 WP_004298830.1 catabolite control protein A Regulator
  PFZ59_RS06940 (PFZ59_06940) - 1360082..1361086 (+) 1005 WP_277696681.1 IS5 family transposase -
  PFZ59_RS06945 (PFZ59_06945) scnR 1362040..1362690 (+) 651 WP_277696682.1 response regulator transcription factor Regulator
  PFZ59_RS06950 (PFZ59_06950) - 1362691..1363875 (+) 1185 WP_277696683.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 334 a.a.        Molecular weight: 36786.97 Da        Isoelectric Point: 5.5173

>NTDB_id=709870 PFZ59_RS06935 WP_004298830.1 1358771..1359775(+) (ccpA) [Streptococcus suis strain SS/UPM/MY/F001]
MLNTDDTVTIYDVAREAGVSMATVSRVVNGNKNVKENTRKKVLEVIDRLDYRPNAVARGLASKKTTTVGVVIPNIANAYF
ATLAKGIDDIADMYKYNIVLANSDENDEKEINVVNTLFSKQVDGIIFMGYHLTDKIRAEFSRSRTPIVLAGTVDLEHQLP
SVNIDYAAASVDAVNLLAKNNKKIAFVSGPLVDDINGKVRFAGYKQGLKDNGIEFNEGLVFESKYKYEEGYALAERILNA
GATAAYVAEDEIAAGLLNGVSDMGIKVPEDFEIITSDDSLVTKFTRPNLTSINQPLYDIGAIAMRMLTKIMHKEELENRE
VVLNHGIKVRKSTK

Nucleotide


Download         Length: 1005 bp        

>NTDB_id=709870 PFZ59_RS06935 WP_004298830.1 1358771..1359775(+) (ccpA) [Streptococcus suis strain SS/UPM/MY/F001]
ATGTTAAACACTGATGATACGGTAACGATTTATGACGTTGCCCGCGAAGCAGGTGTATCCATGGCGACAGTATCGCGCGT
GGTAAATGGGAATAAAAACGTAAAAGAAAATACTCGTAAAAAAGTATTAGAAGTCATCGACCGTTTGGATTATCGTCCAA
ATGCCGTTGCACGTGGATTGGCCAGCAAGAAGACTACCACTGTGGGGGTTGTGATTCCAAATATTGCTAATGCTTATTTT
GCAACCTTGGCTAAAGGTATCGATGATATTGCCGATATGTACAAATACAATATCGTCCTAGCAAACAGTGATGAAAATGA
TGAGAAAGAAATCAATGTGGTGAATACCCTATTCTCAAAACAGGTGGACGGAATCATTTTCATGGGCTATCATTTGACAG
ACAAGATTCGTGCGGAGTTTTCACGCTCACGTACACCGATTGTTTTAGCTGGTACCGTGGACTTGGAGCACCAATTACCT
AGTGTCAATATTGACTATGCTGCCGCTAGTGTTGATGCAGTCAATCTATTAGCTAAGAACAATAAGAAAATTGCCTTTGT
ATCAGGGCCGCTTGTAGATGACATCAACGGTAAAGTTCGTTTTGCAGGCTACAAACAAGGCTTGAAGGACAACGGAATCG
AGTTTAACGAAGGATTGGTTTTTGAATCCAAGTATAAATACGAGGAAGGCTACGCTCTAGCAGAACGTATTTTGAATGCC
GGAGCAACTGCAGCTTATGTTGCAGAAGATGAGATTGCTGCTGGTCTATTGAATGGTGTCAGTGATATGGGCATCAAGGT
TCCAGAAGACTTTGAAATCATTACAAGTGATGATTCCCTAGTGACCAAGTTTACCCGTCCAAACCTGACCTCTATCAATC
AGCCGCTATACGATATTGGTGCAATTGCTATGCGCATGCTCACCAAAATCATGCACAAGGAAGAGTTGGAAAACCGTGAG
GTAGTTCTTAACCACGGAATCAAAGTACGGAAATCAACTAAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, lacI family (LacI)

(9-54)

Periplasmic binding protein-like domain (Peripla_BP_3)

(176-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3MYC9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ccpA Streptococcus pneumoniae D39

79.88

99.701

0.796
  ccpA Streptococcus gordonii str. Challis substr. CH1

79.279

99.701

0.79
  ccpA Lactococcus lactis subsp. lactis strain DGCC12653

58.912

99.102

0.584