Detailed information NTG0709682

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NMG40_RS23780
• Genome accession: NZ_CP101325
• Coordinates: 5151208..5152080 (+)
• Length: 290 a.a.
• NCBI ID: WP_003107301.1
• Uniprot ID: -
• Organism: Pseudomonas aeruginosa strain LG2-2
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5146208..5157080

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMG40_RS23765	-	5147591..5148055 (-)	465	WP_003122079.1	pilin	-
NMG40_RS23770	pilB	5148286..5149986 (+)	1701	WP_003122078.1	type IV-A pilus assembly ATPase PilB	Machinery gene
NMG40_RS23775	pilC	5149990..5151207 (+)	1218	WP_003107299.1	type II secretion system F family protein	Machinery gene
NMG40_RS23780	pilD	5151208..5152080 (+)	873	WP_003107301.1	type IV prepilin peptidase/methyltransferase PilD	Machinery gene
NMG40_RS23785	coaE	5152077..5152688 (+)	612	WP_003094654.1	dephospho-CoA kinase	-
NMG40_RS23790	yacG	5152685..5152885 (+)	201	WP_003094656.1	DNA gyrase inhibitor YacG	-
NMG40_RS23795	-	5152922..5153131 (-)	210	WP_003094660.1	hypothetical protein	-
NMG40_RS23800	-	5153237..5153926 (-)	690	WP_003103868.1	energy-coupling factor ABC transporter permease	-
NMG40_RS23805	-	5153923..5154393 (-)	471	WP_003103866.1	hypothetical protein	-
NMG40_RS23810	-	5154390..5154815 (-)	426	WP_003103865.1	GNAT family N-acetyltransferase	-
NMG40_RS23815	-	5154948..5155577 (+)	630	WP_003094668.1	DUF1780 domain-containing protein	-
NMG40_RS23820	-	5155574..5156023 (+)	450	WP_003094670.1	MOSC domain-containing protein	-
NMG40_RS23825	-	5156049..5156219 (+)	171	WP_003094672.1	DUF3094 family protein	-

Sequence

Protein

• Length: 290 a.a.
• Molecular weight: 31873.90 Da
• Isoelectric Point: 7.7068

>NTDB_id=709682 NMG40_RS23780 WP_003107301.1 5151208..5152080(+) (pilD) [Pseudomonas aeruginosa strain LG2-2]
MTLLDYLASHPLAFVLCTILLGLLVGSFLNVVVHRLPKMMERNWKAEAREALGLEPEPKQATYNLVLPNSACPRCGHEIR
PWENIPLVSYLALGGKCSSCKAAIGKRYPLVELATALLSGYVAWHFGFTWQAGAMLLLTWGLLAMSLIDADHQLLPDVLV
LPLLWLGLIANHFGLFASLDDALFGAVFGYLSLWSVFWLFKLVTGKEGMGYGDFKLLAMLGAWGGWQILPLTILLSSLVG
AILGVIMLRLRNAESGTPIPFGPYLAIAGWIALLWGDQITRTYLQFAGFK

Nucleotide

• Length: 873 bp

>NTDB_id=709682 NMG40_RS23780 WP_003107301.1 5151208..5152080(+) (pilD) [Pseudomonas aeruginosa strain LG2-2]
ATGACCCTCCTCGACTACCTGGCCAGCCATCCGCTGGCCTTTGTCTTGTGCACCATCCTCCTCGGCCTGCTGGTCGGCAG
CTTCCTCAACGTCGTCGTGCATCGCCTGCCGAAGATGATGGAGCGCAACTGGAAGGCCGAAGCCCGCGAAGCGCTCGGGC
TGGAGCCGGAACCCAAGCAGGCGACCTACAACCTGGTGCTGCCGAATTCGGCGTGCCCGCGCTGCGGCCACGAGATCCGC
CCCTGGGAAAACATCCCGCTGGTCAGCTACCTGGCGCTGGGCGGCAAGTGCTCGTCCTGCAAGGCCGCCATCGGCAAACG
CTACCCCCTGGTGGAACTGGCCACCGCGCTGCTTTCCGGCTACGTCGCCTGGCATTTCGGCTTCACCTGGCAGGCGGGCG
CGATGCTCCTGCTGACCTGGGGTCTGCTGGCGATGAGCCTGATCGATGCCGATCACCAACTGCTGCCGGACGTGCTGGTG
CTGCCGCTGCTCTGGCTGGGCCTGATCGCCAACCATTTCGGCCTCTTCGCCAGCCTCGACGATGCGCTGTTCGGCGCGGT
GTTCGGCTACCTGAGCCTGTGGTCGGTGTTCTGGCTGTTCAAGCTGGTGACCGGCAAGGAGGGCATGGGCTACGGCGACT
TCAAGCTGCTGGCCATGCTCGGTGCCTGGGGCGGCTGGCAGATCCTGCCGCTGACCATCCTGCTGTCGTCGCTGGTCGGG
GCGATCCTCGGGGTGATCATGCTGCGCCTGCGCAACGCCGAAAGCGGCACGCCGATCCCCTTCGGTCCCTATCTGGCGAT
TGCCGGGTGGATTGCTTTGCTCTGGGGTGATCAAATAACCCGGACCTATCTGCAATTCGCCGGATTCAAATGA

Domains

Predicted by InterproScan.

• Type IV leader peptidase family (Peptidase_A24) (137-245)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (20-126)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	55.357	96.552	0.534
pilD	Vibrio campbellii strain DS40M4	52.65	97.586	0.514
pilD	Acinetobacter nosocomialis M2	50.53	97.586	0.493
pilD	Acinetobacter baumannii D1279779	50.53	97.586	0.493
pilD	Neisseria gonorrhoeae MS11	48.921	95.862	0.469