Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMJ60_RS11040 Genome accession   NZ_CP101314
Coordinates   2207192..2207587 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus strain #492     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2202192..2212587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMJ60_RS11015 thiE 2202791..2203432 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  NMJ60_RS11020 thiM 2203434..2204225 (-) 792 WP_001108483.1 hydroxyethylthiazole kinase -
  NMJ60_RS11025 thiD 2204209..2205039 (-) 831 WP_000594954.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NMJ60_RS11030 tenA 2205032..2205721 (-) 690 WP_044425301.1 thiaminase II -
  NMJ60_RS11035 sceD 2206108..2206803 (-) 696 WP_000752005.1 lytic transglycosylase SceD -
  NMJ60_RS11040 ssb 2207192..2207587 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NMJ60_RS11045 - 2207781..2208221 (+) 441 WP_000846746.1 YwpF-like family protein -
  NMJ60_RS11050 fabZ 2208280..2208720 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NMJ60_RS11055 murA 2208754..2210019 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NMJ60_RS11060 - 2210130..2210363 (-) 234 WP_000384523.1 DUF1146 family protein -
  NMJ60_RS11065 - 2210495..2210587 (-) 93 WP_001790611.1 hypothetical protein -
  NMJ60_RS11070 - 2210925..2211329 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=709656 NMJ60_RS11040 WP_000932694.1 2207192..2207587(-) (ssb) [Staphylococcus aureus strain #492]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=709656 NMJ60_RS11040 WP_000932694.1 2207192..2207587(-) (ssb) [Staphylococcus aureus strain #492]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992