Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7680_RS06935 Genome accession   NZ_AP023394
Coordinates   1400540..1401136 (-) Length   198 a.a.
NCBI ID   WP_014612440.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 159     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1395540..1406136
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7680_RS06920 (SDSE159_13550) - 1396950..1397645 (-) 696 WP_184006675.1 TIGR02206 family membrane protein -
  H7680_RS06925 (SDSE159_13560) murF 1397749..1399116 (-) 1368 WP_014612439.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  H7680_RS06930 (SDSE159_13570) - 1399322..1400368 (-) 1047 WP_003060500.1 D-alanine--D-alanine ligase -
  H7680_RS06935 (SDSE159_13580) recR 1400540..1401136 (-) 597 WP_014612440.1 recombination mediator RecR Machinery gene
  H7680_RS06940 (SDSE159_13590) pbp2b 1401148..1403202 (-) 2055 WP_014612441.1 penicillin-binding protein PBP2B -
  H7680_RS06945 (SDSE159_13600) - 1403309..1404079 (-) 771 WP_184006677.1 formate/nitrite transporter family protein -
  H7680_RS06950 (SDSE159_13610) - 1404206..1404748 (-) 543 WP_003053939.1 hypothetical protein -
  H7680_RS06955 (SDSE159_13620) - 1404850..1405371 (-) 522 WP_003053932.1 transcription repressor NadR -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21613.77 Da        Isoelectric Point: 4.7577

>NTDB_id=70958 H7680_RS06935 WP_014612440.1 1400540..1401136(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
MFYPTPIAKLIESYSKLPGIGVKTATRLAFYTIGMSDEAVNDFAKNLLAAKRELTYCSICGNLTDDDPCSICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVTEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=70958 H7680_RS06935 WP_014612440.1 1400540..1401136(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis strain 159]
GTGTTTTACCCAACCCCTATTGCAAAATTAATCGAAAGTTATTCCAAGCTCCCAGGAATTGGGGTAAAAACGGCAACTAG
ACTTGCCTTTTACACAATTGGAATGTCTGACGAGGCTGTCAATGACTTTGCTAAAAATTTATTGGCAGCTAAAAGAGAAT
TAACCTATTGTTCCATTTGTGGCAACCTGACAGATGATGATCCTTGTTCTATCTGCACAGATACAAGTCGTGACCAGACA
ACGATTCTTGTGGTGGAAGATGCTAAAGATGTTTCTGCTATGGAAAAAATTCAAGAGTATCATGGTTATTACCATGTGCT
GCATGGTTTAATTTCACCGATGAATGGTGTTGGTCCGGATGATATCAATCTAAAAAGTTTAATTACTCGTTTAATGGACG
GTAAAGTGACTGAAGTTATCATAGCGACCAATGCCACAGCTGATGGCGAAGCAACATCTATGTATATCTCACGGGTCTTG
AAACCAGCAGGAATCAAAGTTACCCGCTTAGCAAGAGGGCTCGCAGTGGGGTCAGATATTGAATACGCAGATGAAGTCAC
CTTGTTAAGAGCTATTGAAAACCGCACAGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495

Multiple sequence alignment