Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PGH47_RS23265 Genome accession   NZ_CP116353
Coordinates   5214553..5215152 (+) Length   199 a.a.
NCBI ID   WP_030053254.1    Uniprot ID   A0A9X1TPA7
Organism   Streptomyces sp. HUAS 31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5209553..5220152
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH47_RS23250 (PGH47_23250) - 5211641..5213044 (+) 1404 WP_271665058.1 M28 family metallopeptidase -
  PGH47_RS23255 (PGH47_23255) - 5213061..5213813 (-) 753 WP_107904690.1 SLATT domain-containing protein -
  PGH47_RS23260 (PGH47_23260) - 5214116..5214460 (+) 345 WP_030956117.1 YbaB/EbfC family nucleoid-associated protein -
  PGH47_RS23265 (PGH47_23265) recR 5214553..5215152 (+) 600 WP_030053254.1 recombination mediator RecR Machinery gene
  PGH47_RS23270 (PGH47_23270) - 5215145..5215807 (+) 663 WP_269641648.1 DUF5063 domain-containing protein -
  PGH47_RS23275 (PGH47_23275) - 5215834..5216670 (-) 837 WP_271665059.1 PhzF family phenazine biosynthesis isomerase -
  PGH47_RS23280 (PGH47_23280) - 5216884..5217297 (+) 414 WP_271665060.1 SsgA family sporulation/cell division regulator -
  PGH47_RS23285 (PGH47_23285) - 5217403..5217759 (+) 357 WP_271665061.1 hypothetical protein -
  PGH47_RS23290 (PGH47_23290) - 5217784..5218515 (-) 732 WP_271665062.1 sulfite exporter TauE/SafE family protein -
  PGH47_RS23295 (PGH47_23295) - 5218716..5219219 (+) 504 WP_271665063.1 SgcJ/EcaC family oxidoreductase -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 21794.17 Da        Isoelectric Point: 4.9909

>NTDB_id=709539 PGH47_RS23265 WP_030053254.1 5214553..5215152(+) (recR) [Streptomyces sp. HUAS 31]
MYEGVVQDLIDELGRLPGVGPKSAQRIAFHILQAEPTDVRRLAQALMEVKAKVRFCATCGNVAQEELCNICRDTRRDPAV
ICVVEEPKDVVAIERTREFRGRYHVLGGAISPIEGVGPDDLRIRELLARLADGTVTELILATDPNLEGEATATYLARMIK
PMGLKVTRLASGLPVGGDLEYADEVTLGRAFEGRRLLDV

Nucleotide


Download         Length: 600 bp        

>NTDB_id=709539 PGH47_RS23265 WP_030053254.1 5214553..5215152(+) (recR) [Streptomyces sp. HUAS 31]
TTGTACGAAGGCGTGGTTCAGGACCTCATCGACGAGCTGGGTCGGCTGCCCGGCGTCGGTCCCAAGAGCGCGCAGCGGAT
CGCCTTCCACATCCTCCAGGCGGAACCGACGGACGTACGGCGCCTCGCCCAGGCCCTCATGGAGGTCAAGGCGAAGGTCC
GCTTCTGCGCGACGTGCGGGAACGTCGCGCAGGAGGAGCTGTGCAACATCTGCCGGGACACGCGCCGTGACCCGGCGGTG
ATCTGCGTGGTCGAGGAGCCCAAGGACGTCGTGGCGATCGAGCGGACCCGTGAGTTCCGCGGCCGCTACCACGTCCTCGG
CGGCGCGATCAGCCCGATCGAGGGTGTCGGACCGGACGACCTGCGTATACGAGAACTTCTCGCGCGGTTGGCCGACGGGA
CGGTCACGGAGCTGATCCTGGCCACCGATCCGAATCTCGAGGGCGAGGCCACCGCCACGTACCTCGCGCGCATGATCAAG
CCCATGGGCCTGAAGGTCACCCGCCTGGCCAGCGGCCTCCCGGTGGGTGGCGACCTGGAATACGCGGACGAGGTCACCCT
CGGCCGCGCCTTCGAGGGGAGACGACTCCTAGATGTCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH)

(2-27)

Toprim domain (Toprim_4)

(80-170)

RecR protein (RecR_ZnF)

(38-77)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A9X1TPA7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

55.612

98.492

0.548
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

53.608

97.487

0.523
  recR Streptococcus pneumoniae R6

46.392

97.487

0.452