Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   NMT99_RS12385 Genome accession   NZ_CP101290
Coordinates   2413525..2413860 (+) Length   111 a.a.
NCBI ID   WP_003226345.1    Uniprot ID   A0AAE2VGU9
Organism   Bacillus subtilis strain LjM2     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2408525..2418860
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMT99_RS12365 gcvT 2409118..2410206 (-) 1089 WP_015714248.1 glycine cleavage system aminomethyltransferase GcvT -
  NMT99_RS12370 hepAA 2410647..2412320 (+) 1674 WP_029726726.1 DEAD/DEAH box helicase -
  NMT99_RS12375 yqhG 2412341..2413135 (+) 795 WP_015714249.1 YqhG family protein -
  NMT99_RS12380 sinI 2413318..2413491 (+) 174 WP_003230187.1 anti-repressor SinI Regulator
  NMT99_RS12385 sinR 2413525..2413860 (+) 336 WP_003226345.1 transcriptional regulator SinR Regulator
  NMT99_RS12390 tasA 2413953..2414738 (-) 786 WP_014664586.1 biofilm matrix protein TasA -
  NMT99_RS12395 sipW 2414802..2415374 (-) 573 WP_072692741.1 signal peptidase I SipW -
  NMT99_RS12400 tapA 2415358..2416119 (-) 762 WP_029726724.1 amyloid fiber anchoring/assembly protein TapA -
  NMT99_RS12405 yqzG 2416390..2416716 (+) 327 WP_003246051.1 YqzG/YhdC family protein -
  NMT99_RS12410 spoIITA 2416758..2416937 (-) 180 WP_029726723.1 YqzE family protein -
  NMT99_RS12415 comGG 2417009..2417383 (-) 375 WP_029726722.1 ComG operon protein ComGG Machinery gene
  NMT99_RS12420 comGF 2417384..2417767 (-) 384 WP_029726721.1 ComG operon protein ComGF Machinery gene
  NMT99_RS12425 comGE 2417793..2418140 (-) 348 WP_014480255.1 ComG operon protein 5 Machinery gene
  NMT99_RS12430 comGD 2418124..2418555 (-) 432 WP_029726720.1 comG operon protein ComGD Machinery gene
  NMT99_RS12435 comGC 2418545..2418841 (-) 297 WP_029726719.1 comG operon protein ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12988.64 Da        Isoelectric Point: 7.2023

>NTDB_id=709477 NMT99_RS12385 WP_003226345.1 2413525..2413860(+) (sinR) [Bacillus subtilis strain LjM2]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKSQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=709477 NMT99_RS12385 WP_003226345.1 2413525..2413860(+) (sinR) [Bacillus subtilis strain LjM2]
TTGATTGGCCAGCGTATTAAACAATACCGTAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATCTACAAACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTGCTCGATGAGAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTGGTTCGCGATGCGATGACATCCGGGGTATCGAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAATC
ACAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

100

100

1