Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PIB63_RS13315 Genome accession   NZ_CP116194
Coordinates   2676199..2676855 (-) Length   218 a.a.
NCBI ID   WP_000611328.1    Uniprot ID   P66797
Organism   Escherichia coli strain DETEC-E1005     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2671199..2681855
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIB63_RS13285 (PIB63_13285) yecA 2672451..2673116 (-) 666 WP_000847877.1 UPF0149 family protein YecA -
  PIB63_RS13305 (PIB63_13305) pgsA 2673765..2674313 (-) 549 WP_001538881.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PIB63_RS13310 (PIB63_13310) uvrC 2674370..2676202 (-) 1833 WP_001773939.1 excinuclease ABC subunit UvrC Machinery gene
  PIB63_RS13315 (PIB63_13315) letA 2676199..2676855 (-) 657 WP_000611328.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PIB63_RS13320 (PIB63_13320) yecU 2677151..2677327 (+) 177 WP_001307856.1 protein YecU -
  PIB63_RS13325 (PIB63_13325) yecF 2677314..2677538 (+) 225 WP_000106474.1 DUF2594 family protein YecF -
  PIB63_RS13330 (PIB63_13330) sdiA 2677606..2678328 (-) 723 WP_001154255.1 transcriptional regulator SdiA -
  PIB63_RS13335 (PIB63_13335) tcyN 2678558..2679310 (-) 753 WP_001273000.1 L-cystine ABC transporter ATP-binding protein TcyN -
  PIB63_RS13340 (PIB63_13340) tcyL 2679307..2679975 (-) 669 WP_001158220.1 cystine ABC transporter permease -
  PIB63_RS13345 (PIB63_13345) dcyD 2679990..2680976 (-) 987 WP_001128237.1 D-cysteine desulfhydrase -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23862.63 Da        Isoelectric Point: 6.9614

>NTDB_id=709071 PIB63_RS13315 WP_000611328.1 2676199..2676855(-) (letA) [Escherichia coli strain DETEC-E1005]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRANAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITKGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=709071 PIB63_RS13315 WP_000611328.1 2676199..2676855(-) (letA) [Escherichia coli strain DETEC-E1005]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAATGGTGCCGGGCAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGAGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTTAGTGCGATTCGTTCTGTCTATTCAGGGCAGCGTTACATTGCTTCTGATATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAAGGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory proteins, luxR family (GerE)

(149-204)

Response regulator receiver domain (Response_reg)

(4-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P66797

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

50.725

94.954

0.482
  letA Legionella pneumophila strain ERS1305867

50.725

94.954

0.482