Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NL113_RS18860 Genome accession   NZ_CP101130
Coordinates   3758677..3760407 (+) Length   576 a.a.
NCBI ID   WP_006637492.1    Uniprot ID   A0A7Y8V1C6
Organism   Bacillus sp. KRF7     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3753677..3765407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NL113_RS18835 - 3753953..3754213 (+) 261 WP_006637497.1 exodeoxyribonuclease VII small subunit -
  NL113_RS18840 - 3754203..3755093 (+) 891 WP_006637496.1 polyprenyl synthetase family protein -
  NL113_RS18845 dxs 3755348..3757249 (+) 1902 WP_006637495.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NL113_RS18850 - 3757246..3758091 (+) 846 WP_006637494.1 TlyA family RNA methyltransferase -
  NL113_RS18855 argR 3758198..3758647 (+) 450 WP_006637493.1 transcriptional regulator ArgR -
  NL113_RS18860 recN 3758677..3760407 (+) 1731 WP_006637492.1 DNA repair protein RecN Machinery gene
  NL113_RS18865 spoIVB 3760588..3761904 (+) 1317 WP_051056677.1 SpoIVB peptidase -
  NL113_RS18870 spo0A 3762194..3762994 (+) 801 WP_006637490.1 sporulation transcription factor Spo0A Regulator
  NL113_RS18875 - 3763078..3763389 (-) 312 WP_006637489.1 hypothetical protein -
  NL113_RS18880 - 3763401..3764846 (-) 1446 WP_176463742.1 lipase -
  NL113_RS18885 - 3764891..3765235 (+) 345 WP_006637487.1 DUF1433 domain-containing protein -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64331.17 Da        Isoelectric Point: 4.8195

>NTDB_id=708992 NL113_RS18860 WP_006637492.1 3758677..3760407(+) (recN) [Bacillus sp. KRF7]
MLAELSIKNFAIIEELTISFEKGLTVLTGETGAGKSIIIDAISLLVGGRGSSEYVRYGEKRAELEGLFLLDSGHPVFDLC
GELGIDASDEMIVMRRDINANGKSICRVNGKLVTIAALREVGRLLLDIHGQHDNQLLMEDDHHLQLLDRYAGEEIEKALK
AYQEVYSCYMNVMKKVKQLSESEQEMAHRLDLIQFQLDEIESANLEPKEDELLEEERRQISNFEKIYEALQNAYNALRNE
QAGLDWVGMASSELENVSGINDGLKKISESVANAYYILEDSTFQIRNMLDDLEYDPARLDFIESRLNEIKQLKRKYGATV
EDIQAYSAKIEEEIDRIQNRDSHLQALKEELESVGKDVAIEAMNVSDIRKSWAKKLANQIQQELKELYMGKSTFDTEFQL
KTADAREEAPVVNGTPVHLTKQGIDSVRFLISTNTGEPLKSLSKVASGGELSRIMLAMKSIFSAQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHRVSIGSQVLCITHLPQVAAMADTHLLITKQSKDGRTTTSVTPLSKQEKISEIGRMIAGVEVTDLTKR
HAKELLHQAKLVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=708992 NL113_RS18860 WP_006637492.1 3758677..3760407(+) (recN) [Bacillus sp. KRF7]
TTGTTAGCTGAATTATCGATTAAGAACTTTGCGATTATCGAAGAACTAACCATTTCTTTTGAAAAAGGGCTGACGGTGTT
AACCGGCGAAACCGGGGCCGGAAAATCGATCATCATCGATGCCATCTCTTTGCTTGTGGGCGGAAGAGGTTCATCCGAAT
ATGTCAGATATGGAGAAAAAAGAGCCGAATTAGAAGGGCTTTTTCTGCTGGACAGCGGGCATCCGGTCTTCGATCTGTGC
GGAGAGCTTGGCATCGACGCTTCTGACGAGATGATCGTCATGAGACGGGATATCAATGCAAACGGCAAAAGCATCTGCCG
TGTAAATGGCAAGCTTGTGACGATTGCCGCTTTGCGGGAGGTCGGCAGGCTTCTGCTTGATATCCACGGTCAGCACGATA
ACCAGCTGCTAATGGAAGACGACCATCATCTTCAGCTTTTGGACCGGTACGCCGGCGAGGAAATCGAAAAAGCGCTGAAA
GCCTACCAGGAAGTTTACAGCTGCTATATGAACGTCATGAAAAAGGTGAAACAGCTTTCTGAAAGCGAACAGGAAATGGC
CCACAGACTTGATTTGATTCAGTTTCAGCTTGATGAAATCGAATCCGCAAACCTCGAGCCCAAAGAGGACGAGCTTTTGG
AGGAAGAGCGCCGGCAGATTTCAAACTTTGAGAAAATATATGAAGCTTTGCAAAATGCCTATAACGCGCTTCGCAACGAA
CAGGCCGGACTCGATTGGGTCGGGATGGCATCAAGCGAGCTGGAGAATGTCTCCGGCATCAATGACGGACTGAAAAAGAT
ATCTGAATCTGTTGCCAACGCTTACTATATTTTGGAGGATTCAACCTTTCAAATCAGAAACATGCTGGACGACTTGGAAT
ACGATCCGGCACGGCTCGATTTCATTGAATCCAGATTGAACGAAATCAAACAATTGAAGCGAAAATACGGCGCCACTGTT
GAAGATATACAGGCATATTCCGCGAAAATCGAGGAAGAAATCGATCGTATCCAAAACCGTGACAGCCATCTGCAGGCATT
AAAAGAGGAGCTCGAATCAGTCGGCAAAGATGTCGCGATCGAAGCGATGAATGTGTCAGATATCCGAAAATCATGGGCGA
AAAAACTTGCCAACCAGATTCAGCAGGAACTAAAAGAGCTCTATATGGGAAAATCGACGTTCGATACCGAATTCCAACTG
AAAACGGCAGATGCCCGCGAAGAAGCACCTGTCGTGAACGGAACCCCTGTTCATCTGACAAAGCAGGGGATTGACAGCGT
CCGCTTTTTAATTTCGACCAATACCGGCGAACCGCTGAAATCCTTGTCAAAAGTCGCTTCAGGCGGCGAATTGTCAAGAA
TTATGCTGGCGATGAAAAGCATTTTCTCCGCGCAGCAGGACGTCACATCGATCATTTTTGACGAAGTGGACACCGGGGTG
AGCGGGAGAGTGGCGCAGGCGATCGCCGAGAAAATCCACCGCGTATCGATCGGCTCCCAAGTGCTGTGCATCACCCATTT
GCCGCAAGTAGCGGCAATGGCGGACACGCATCTTTTAATTACAAAACAGTCCAAGGACGGACGAACGACAACAAGCGTCA
CACCATTGTCAAAACAGGAAAAAATATCGGAAATCGGCCGGATGATTGCCGGCGTCGAAGTGACAGATCTGACGAAGCGC
CATGCAAAGGAGCTTTTGCATCAGGCCAAACTCGTCAAAACCACCGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7Y8V1C6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

81.076

100

0.811