Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   NK667_RS03465 Genome accession   NZ_CP101125
Coordinates   752762..753400 (+) Length   212 a.a.
NCBI ID   WP_054051742.1    Uniprot ID   A0A6L5BRY9
Organism   Pseudomonas nunensis strain In5     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 747762..758400
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NK667_RS03445 (NK667_03445) - 747923..748855 (+) 933 WP_054051734.1 ABC transporter ATP-binding protein -
  NK667_RS03450 (NK667_03450) - 748852..749631 (+) 780 WP_054051736.1 ABC transporter permease -
  NK667_RS03455 (NK667_03455) - 749789..750304 (-) 516 WP_054613850.1 DUF2062 domain-containing protein -
  NK667_RS03460 (NK667_03460) comA 750441..752675 (+) 2235 WP_054613851.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  NK667_RS03465 (NK667_03465) exbB 752762..753400 (+) 639 WP_054051742.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  NK667_RS03470 (NK667_03470) - 753397..753825 (+) 429 WP_054051743.1 ExbD/TolR family protein -
  NK667_RS03475 (NK667_03475) lpxK 753825..754835 (+) 1011 WP_054613852.1 tetraacyldisaccharide 4'-kinase -
  NK667_RS03480 (NK667_03480) - 754861..755046 (+) 186 WP_007945752.1 Trm112 family protein -
  NK667_RS03485 (NK667_03485) kdsB 755043..755807 (+) 765 WP_054051747.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  NK667_RS03490 (NK667_03490) - 755807..756271 (+) 465 WP_054613853.1 low molecular weight protein-tyrosine-phosphatase -
  NK667_RS03495 (NK667_03495) murB 756268..757287 (+) 1020 WP_054613854.1 UDP-N-acetylmuramate dehydrogenase -
  NK667_RS03500 (NK667_03500) - 757534..758004 (+) 471 WP_054051753.1 (2Fe-2S)-binding protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 23143.36 Da        Isoelectric Point: 7.3616

>NTDB_id=708896 NK667_RS03465 WP_054051742.1 752762..753400(+) (exbB) [Pseudomonas nunensis strain In5]
MWELVKSGGWMMLPIILSSIVAMAIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKEKLKELRANSPLGEILAAGLAN
SKHGREIMKECIEEAAARVIHELERYINALGTIAAMAPLLGLLGTVLGMIDIFSSFMGTGMTTNAAVLAGGISKALITTA
SGLIVGIPSVFFHRFLQRRIDELVVGMEQEAIKLVEVVQGDRDVDLSEGKKA

Nucleotide


Download         Length: 639 bp        

>NTDB_id=708896 NK667_RS03465 WP_054051742.1 752762..753400(+) (exbB) [Pseudomonas nunensis strain In5]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGCTGCCGATCATTTTGAGTTCCATCGTGGCCATGGCGATCGTCGC
CGAGCGTCTGTGGACCCTGCGTGCCAGCCGAGTCACCCCGGAGCATTTGCTCGGGCAAGTCTGGGTCTGGATCAAAGACA
AACAGCTCAATAAAGAAAAACTCAAGGAACTGCGCGCCAACTCGCCGTTGGGCGAAATCCTCGCGGCAGGCCTGGCCAAC
TCCAAGCATGGTCGCGAGATCATGAAAGAGTGCATCGAAGAGGCCGCTGCCCGGGTCATCCACGAACTGGAGCGTTACAT
CAACGCCCTGGGCACCATCGCCGCCATGGCCCCGTTGCTCGGGTTGCTGGGGACGGTGCTGGGCATGATCGATATCTTCA
GCTCGTTCATGGGCACGGGCATGACCACCAACGCGGCCGTGCTGGCCGGCGGTATTTCCAAAGCCTTGATCACCACGGCT
TCGGGCCTGATCGTCGGTATCCCGTCGGTATTCTTCCACCGGTTCCTGCAACGGCGCATCGATGAGCTGGTGGTGGGGAT
GGAGCAGGAAGCCATCAAGCTGGTTGAAGTGGTGCAGGGCGACCGTGACGTGGACCTGTCCGAGGGCAAAAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6L5BRY9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

83.333

99.057

0.825