Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NMK49_RS09950 Genome accession   NZ_CP101124
Coordinates   2039970..2040365 (-) Length   131 a.a.
NCBI ID   WP_000932694.1    Uniprot ID   -
Organism   Staphylococcus aureus subsp. aureus RN4220     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2034970..2045365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NMK49_RS09925 thiE 2035570..2036211 (-) 642 WP_000483153.1 thiamine phosphate synthase -
  NMK49_RS09930 thiM 2036213..2037004 (-) 792 WP_001108479.1 hydroxyethylthiazole kinase -
  NMK49_RS09935 thiD 2036988..2037818 (-) 831 WP_000594959.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NMK49_RS09940 tenA 2037811..2038500 (-) 690 WP_000396076.1 thiaminase II -
  NMK49_RS09945 sceD 2038886..2039581 (-) 696 WP_000752008.1 lytic transglycosylase SceD -
  NMK49_RS09950 ssb 2039970..2040365 (-) 396 WP_000932694.1 single-stranded DNA-binding protein Machinery gene
  NMK49_RS09955 - 2040559..2040999 (+) 441 WP_000846746.1 YwpF-like family protein -
  NMK49_RS09960 fabZ 2041058..2041498 (-) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NMK49_RS09965 murA 2041532..2042797 (-) 1266 WP_000358006.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NMK49_RS09970 - 2042908..2043141 (-) 234 WP_000384523.1 DUF1146 family protein -
  NMK49_RS09975 - 2043273..2043365 (-) 93 WP_001790611.1 hypothetical protein -
  NMK49_RS09980 - 2043703..2044107 (-) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15042.09 Da        Isoelectric Point: 5.6824

>NTDB_id=708888 NMK49_RS09950 WP_000932694.1 2039970..2040365(-) (ssb) [Staphylococcus aureus subsp. aureus RN4220]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIEKYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=708888 NMK49_RS09950 WP_000932694.1 2039970..2040365(-) (ssb) [Staphylococcus aureus subsp. aureus RN4220]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAAATATACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

100

100

1
  ssb Staphylococcus aureus MW2

99.237

100

0.992