Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   NLA26_RS13900 Genome accession   NZ_CP101123
Coordinates   2792478..2792873 (+) Length   131 a.a.
NCBI ID   WP_000932696.1    Uniprot ID   A0A166JXQ7
Organism   Staphylococcus aureus strain MN8     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2787478..2797873
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA26_RS13875 - 2788421..2788825 (+) 405 WP_001094394.1 F0F1 ATP synthase subunit epsilon -
  NLA26_RS13880 - 2789704..2789937 (+) 234 WP_000384523.1 DUF1146 family protein -
  NLA26_RS13885 murA 2790048..2791313 (+) 1266 WP_000358009.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  NLA26_RS13890 fabZ 2791347..2791787 (+) 441 WP_000447678.1 3-hydroxyacyl-ACP dehydratase FabZ -
  NLA26_RS13895 - 2791844..2792284 (-) 441 WP_000846746.1 YwpF-like family protein -
  NLA26_RS13900 ssb 2792478..2792873 (+) 396 WP_000932696.1 single-stranded DNA-binding protein Machinery gene
  NLA26_RS13905 sceD 2793262..2793957 (+) 696 WP_000752015.1 lytic transglycosylase SceD -
  NLA26_RS13910 tenA 2794482..2795171 (+) 690 WP_000396068.1 thiaminase II -
  NLA26_RS13915 thiD 2795164..2795994 (+) 831 WP_000594963.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  NLA26_RS13920 thiM 2795978..2796769 (+) 792 WP_001108496.1 hydroxyethylthiazole kinase -
  NLA26_RS13925 thiE 2796771..2797412 (+) 642 WP_000483150.1 thiamine phosphate synthase -

Sequence

Protein


Download         Length: 131 a.a.        Molecular weight: 15070.11 Da        Isoelectric Point: 5.6824

>NTDB_id=708850 NLA26_RS13900 WP_000932696.1 2792478..2792873(+) (ssb) [Staphylococcus aureus strain MN8]
MLNKIVIVGRLTKDAQIFEKEDRKIATFCVATHRNYKDENGEIVCDYLFCKAFGKLASNIERYTNQGTLVGITGQMRSRK
YDKDGQTHFVTELYVETIKFMSPKSQNNEILSDSILDIDSQNIDNHDLLEI

Nucleotide


Download         Length: 396 bp        

>NTDB_id=708850 NLA26_RS13900 WP_000932696.1 2792478..2792873(+) (ssb) [Staphylococcus aureus strain MN8]
ATGCTAAATAAAATCGTAATTGTCGGGAGACTGACGAAAGACGCACAAATATTTGAAAAGGAGGATAGAAAAATTGCAAC
GTTTTGTGTTGCAACGCACCGAAATTATAAAGATGAAAATGGAGAAATCGTCTGTGATTACTTATTCTGTAAAGCATTTG
GCAAGTTAGCTTCTAATATAGAAAGATACACTAATCAAGGTACATTGGTTGGTATAACTGGTCAAATGAGATCAAGAAAG
TATGATAAAGACGGACAAACACACTTTGTCACTGAATTATATGTTGAAACAATAAAATTTATGTCCCCTAAATCCCAAAA
TAATGAAATTCTCTCAGATAGTATTTTAGATATTGACTCTCAAAATATAGATAATCATGACTTATTAGAAATTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A166JXQ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Staphylococcus aureus N315

99.237

100

0.992
  ssb Staphylococcus aureus MW2

98.473

100

0.985