Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   NLA26_RS08185 Genome accession   NZ_CP101123
Coordinates   1613646..1614215 (-) Length   189 a.a.
NCBI ID   WP_000872867.1    Uniprot ID   -
Organism   Staphylococcus aureus strain MN8     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1608646..1619215
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLA26_RS08145 - 1609120..1609728 (-) 609 WP_000020304.1 class I SAM-dependent methyltransferase -
  NLA26_RS08150 rplL 1609903..1610271 (-) 369 WP_001273587.1 50S ribosomal protein L7/L12 -
  NLA26_RS08155 rplJ 1610314..1610814 (-) 501 WP_001273085.1 50S ribosomal protein L10 -
  NLA26_RS08160 rplA 1611089..1611778 (-) 690 WP_001074620.1 50S ribosomal protein L1 -
  NLA26_RS08165 rplK 1611986..1612408 (-) 423 WP_001085792.1 50S ribosomal protein L11 -
  NLA26_RS08170 nusG 1612589..1613137 (-) 549 WP_001288302.1 transcription termination/antitermination protein NusG -
  NLA26_RS08175 secE 1613150..1613332 (-) 183 WP_001074473.1 preprotein translocase subunit SecE -
  NLA26_RS08180 rpmG 1613388..1613531 (-) 144 WP_001791441.1 50S ribosomal protein L33 -
  NLA26_RS08185 sigH 1613646..1614215 (-) 570 WP_000872867.1 sigma-70 family RNA polymerase sigma factor Regulator
  NLA26_RS08190 - 1614296..1614820 (-) 525 WP_000664740.1 NYN domain-containing protein -
  NLA26_RS08195 rlmB 1614820..1615566 (-) 747 WP_000390332.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  NLA26_RS08200 - 1615574..1615978 (-) 405 WP_000370181.1 Mini-ribonuclease 3 -
  NLA26_RS08205 cysS 1615971..1617371 (-) 1401 WP_000631982.1 cysteine--tRNA ligase -
  NLA26_RS08210 cysE 1617355..1618002 (-) 648 WP_001805237.1 serine O-acetyltransferase -

Sequence

Protein


Download         Length: 189 a.a.        Molecular weight: 23111.98 Da        Isoelectric Point: 9.6015

>NTDB_id=708840 NLA26_RS08185 WP_000872867.1 1613646..1614215(-) (sigH) [Staphylococcus aureus strain MN8]
MKYDLTTQDSTIKRNNAINDKDFEKLVMDLQPLIIRRIKTFGFNHYDLEDLYQEILIRMYRSVQTFDFSAEQPFTNYVQC
LITSVKYDYLRKYLATNKRMDNLINEYRVTYPCAIKRYDVENNYLNKLAIKELIRQFKYLSAFEKDVMYLMCEQYKPREI
AQLMHVKEKVIYNAIQRCKNKIKRYFKMI

Nucleotide


Download         Length: 570 bp        

>NTDB_id=708840 NLA26_RS08185 WP_000872867.1 1613646..1614215(-) (sigH) [Staphylococcus aureus strain MN8]
TTGAAATATGATTTGACAACTCAAGACAGTACAATCAAACGTAACAATGCAATAAATGATAAAGACTTCGAAAAGTTAGT
AATGGATCTACAACCATTAATTATACGGCGCATCAAAACATTTGGATTTAATCATTATGATTTAGAAGATTTATATCAAG
AAATACTTATACGGATGTATAGGTCGGTCCAAACATTTGATTTTAGTGCAGAGCAGCCTTTCACAAATTATGTTCAATGT
TTAATTACGTCTGTAAAGTATGATTATTTGAGAAAATATTTAGCTACAAATAAAAGAATGGATAATTTGATTAATGAATA
TAGAGTTACGTATCCATGTGCAATAAAGCGTTATGATGTTGAAAACAATTATTTGAATAAATTAGCAATTAAAGAGTTGA
TTCGTCAGTTTAAGTATTTGAGTGCATTTGAAAAAGATGTCATGTATTTAATGTGTGAACAATATAAGCCGAGAGAAATT
GCTCAACTGATGCATGTAAAAGAGAAAGTGATTTATAATGCCATACAACGATGTAAAAATAAAATAAAACGTTATTTCAA
AATGATTTGA

Domains

Predicted by InterproScan.

Sigma-70 region 2 (Sigma70_r2)

(26-92)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Staphylococcus aureus MW2

98.942

100

0.989
  sigH Staphylococcus aureus N315

97.884

100

0.979