Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   NLK58_RS17560 Genome accession   NZ_CP101118
Coordinates   3759032..3760420 (-) Length   462 a.a.
NCBI ID   WP_117619590.1    Uniprot ID   A0A346S4E0
Organism   Marinobacter metalliresistant strain CuT 6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3754032..3765420
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLK58_RS17535 (NLK58_17465) - 3754102..3754575 (+) 474 WP_117619585.1 PilX N-terminal domain-containing pilus assembly protein -
  NLK58_RS17540 (NLK58_17470) - 3754609..3754977 (+) 369 WP_117619586.1 hypothetical protein -
  NLK58_RS17545 (NLK58_17475) - 3755187..3757811 (+) 2625 WP_341581395.1 PilC/PilY family type IV pilus protein -
  NLK58_RS17550 (NLK58_17480) - 3757815..3758267 (+) 453 WP_117619588.1 type IV pilin protein -
  NLK58_RS17555 (NLK58_17485) - 3758340..3758906 (-) 567 WP_162893763.1 GspH/FimT family pseudopilin -
  NLK58_RS17560 (NLK58_17490) pilR 3759032..3760420 (-) 1389 WP_117619590.1 sigma-54 dependent transcriptional regulator Regulator
  NLK58_RS17565 (NLK58_17495) - 3760477..3762138 (-) 1662 WP_117619591.1 PAS domain-containing sensor histidine kinase -
  NLK58_RS17570 (NLK58_17500) - 3762232..3763896 (+) 1665 WP_117619592.1 NAD+ synthase -
  NLK58_RS17575 (NLK58_17505) - 3763996..3764829 (-) 834 WP_117620440.1 outer membrane protein assembly factor BamD -

Sequence

Protein


Download         Length: 462 a.a.        Molecular weight: 50693.80 Da        Isoelectric Point: 4.6763

>NTDB_id=708783 NLK58_RS17560 WP_117619590.1 3759032..3760420(-) (pilR) [Marinobacter metalliresistant strain CuT 6]
MTTYTALIVDDEPDIRELLEITLTRMGITTFTAPDLTSALALLEQNKPNLCLTDMNLPDGNGIELVQWIQQHAPATPVAV
ITAYGNMDTAIESLKAGAFDFVSKPVELPRLRELVNSALKLSEPKADSEDGADEPGLLLGKSPEIRKLRNQTRKLARSQA
PVFISGESGSGKELVARMIHLQGPRREGPFIAVNCGAIPSELMESEFFGHKKGSFTGAVENKDGLFRSANGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRPVGDTKEVPVDIRVLSATHKNLPELVQEGSFRQDLFYRINVIELAVPPLRERLDDIPILA
GHILERIAGEYECDPATLTPAAIERLKSYDFPGNVRELENVLERAFTLCDADQIDADDLHLGNGVQHAASPSQIIAEGQA
GEGENFTVPDGEIDLEGYLESIERQAIEKALEATRWNKTAAAKRLGISFRALRYRLKKLGME

Nucleotide


Download         Length: 1389 bp        

>NTDB_id=708783 NLK58_RS17560 WP_117619590.1 3759032..3760420(-) (pilR) [Marinobacter metalliresistant strain CuT 6]
ATGACCACATACACAGCGCTGATCGTTGACGACGAACCGGACATCCGGGAACTGCTGGAAATCACCCTCACCCGAATGGG
CATAACCACCTTCACGGCACCCGACCTGACCAGCGCTCTGGCGCTGCTGGAGCAGAACAAACCGAACCTCTGCCTCACCG
ACATGAACCTGCCGGACGGCAATGGTATCGAACTGGTTCAGTGGATCCAGCAGCATGCTCCGGCAACACCGGTGGCCGTC
ATTACCGCCTACGGCAATATGGACACGGCGATTGAATCCCTCAAAGCCGGGGCTTTCGATTTTGTTTCCAAGCCGGTGGA
ACTGCCCCGCTTAAGAGAGCTGGTAAACAGTGCGCTCAAGCTCTCGGAGCCCAAGGCGGACTCGGAAGATGGAGCCGACG
AGCCCGGCCTGCTACTCGGTAAATCTCCGGAGATCCGGAAACTCCGGAACCAGACCCGAAAGCTGGCCAGAAGCCAGGCG
CCGGTATTCATCAGTGGTGAGTCCGGCAGTGGTAAGGAACTGGTTGCCCGAATGATTCACCTTCAGGGCCCCCGCCGGGA
GGGACCTTTCATTGCCGTGAACTGTGGTGCGATTCCCTCGGAACTCATGGAGAGTGAATTCTTCGGGCACAAGAAAGGCA
GCTTTACCGGGGCTGTGGAAAACAAGGACGGCCTGTTCCGCTCTGCCAACGGTGGCACTCTGTTTCTGGATGAAGTCGCA
GACCTGCCGCTGGCCATGCAGGTGAAACTGCTCAGGGCCATCCAGGAAAAAGCGGTCCGACCAGTAGGTGACACCAAGGA
AGTACCGGTAGATATCCGGGTGCTGAGCGCCACCCATAAAAACCTGCCGGAACTGGTTCAGGAAGGCAGCTTCCGCCAGG
ACCTGTTCTACCGGATTAACGTGATCGAACTGGCTGTTCCGCCTTTGCGGGAGCGGCTCGATGATATCCCCATACTCGCC
GGCCACATTCTTGAACGTATTGCCGGAGAGTACGAATGCGATCCGGCCACGTTAACTCCCGCTGCGATAGAGCGCCTCAA
GAGCTACGATTTTCCCGGAAACGTGCGGGAATTGGAGAATGTTCTGGAACGCGCGTTTACCCTGTGCGATGCCGACCAGA
TTGACGCTGACGATCTGCATCTCGGGAATGGTGTACAGCATGCCGCATCGCCCTCACAGATTATTGCCGAGGGCCAGGCC
GGCGAAGGTGAGAATTTTACCGTGCCGGATGGTGAAATCGATCTGGAAGGATACCTGGAAAGCATCGAACGGCAAGCGAT
TGAGAAGGCTCTGGAGGCGACCCGCTGGAACAAGACGGCGGCGGCGAAGCGGTTGGGGATCAGTTTTCGGGCGTTGCGGT
ATCGATTGAAGAAGTTGGGGATGGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(419-459)

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(138-304)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A346S4E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

64.579

100

0.647
  pilR Acinetobacter baumannii strain A118

53.362

99.784

0.532
  luxO Vibrio cholerae strain A1552

36.703

98.485

0.361