Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpV   Type   Machinery gene
Locus tag   NGC85_RS08880 Genome accession   NZ_CP101115
Coordinates   1903670..1904134 (-) Length   154 a.a.
NCBI ID   WP_302885505.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1898670..1909134
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS08850 (NGC85_08850) tadA 1898991..1899500 (-) 510 WP_254730344.1 tRNA adenosine(34) deaminase TadA -
  NGC85_RS08855 (NGC85_08855) - 1899507..1900631 (-) 1125 WP_254805573.1 enoyl-CoA hydratase/isomerase family protein -
  NGC85_RS08860 (NGC85_08860) ung 1900628..1901341 (-) 714 WP_254730346.1 uracil-DNA glycosylase -
  NGC85_RS08865 (NGC85_08865) - 1901384..1901980 (-) 597 WP_005053818.1 6-carboxytetrahydropterin synthase -
  NGC85_RS08870 (NGC85_08870) gspK 1902085..1903047 (-) 963 WP_254730348.1 type II secretion system minor pseudopilin GspK -
  NGC85_RS08875 (NGC85_08875) xcpW 1903044..1903673 (-) 630 WP_254730350.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NGC85_RS08880 (NGC85_08880) xcpV 1903670..1904134 (-) 465 WP_302885505.1 type II secretion system minor pseudopilin GspI Machinery gene
  NGC85_RS08885 (NGC85_08885) - 1904274..1904822 (-) 549 WP_254730352.1 type II secretion system protein -
  NGC85_RS08890 (NGC85_08890) - 1904830..1905441 (-) 612 WP_171065762.1 TetR/AcrR family transcriptional regulator -
  NGC85_RS08895 (NGC85_08895) - 1905482..1906255 (-) 774 WP_254730354.1 TatD family hydrolase -
  NGC85_RS08900 (NGC85_08900) - 1906281..1906625 (-) 345 WP_005053804.1 PilZ domain-containing protein -
  NGC85_RS08905 (NGC85_08905) - 1906947..1907459 (-) 513 WP_254730356.1 hypothetical protein -
  NGC85_RS08910 (NGC85_08910) - 1907560..1907868 (-) 309 WP_254730358.1 hypothetical protein -
  NGC85_RS08915 (NGC85_08915) - 1908079..1909065 (-) 987 WP_005058807.1 hypothetical protein -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17010.71 Da        Isoelectric Point: 10.7565

>NTDB_id=708741 NGC85_RS08880 WP_302885505.1 1903670..1904134(-) (xcpV) [Acinetobacter sp. Z1]
MKRCLINPATRSKASRLAAGQSGTRRKPASGFTLLEVMVALAIFAVAAIALTKIAMQYTQATSNAILRTKAQFVAMNEVA
MMEINQEWLDGTQSKQVTAQGETWQIDKKAQSTISPKIQRIELQISLFNREQGKVEAGITNLTFFNYPTQAKTQ

Nucleotide


Download         Length: 465 bp        

>NTDB_id=708741 NGC85_RS08880 WP_302885505.1 1903670..1904134(-) (xcpV) [Acinetobacter sp. Z1]
ATGAAACGTTGTCTCATTAATCCTGCAACTCGAAGCAAAGCTTCACGACTTGCAGCAGGGCAGAGCGGTACTCGGCGTAA
ACCTGCTTCAGGATTTACGTTGCTTGAAGTTATGGTGGCGTTAGCGATTTTCGCTGTAGCTGCGATTGCATTAACTAAAA
TCGCAATGCAATATACCCAAGCAACATCGAATGCGATCTTACGTACCAAAGCACAATTTGTGGCAATGAACGAAGTTGCA
ATGATGGAAATAAATCAAGAGTGGTTGGATGGAACTCAATCTAAGCAAGTTACCGCTCAAGGCGAAACATGGCAAATTGA
TAAAAAAGCCCAATCCACCATTAGTCCAAAGATACAACGGATAGAATTACAAATTAGTTTATTTAATCGCGAGCAGGGTA
AGGTTGAAGCTGGAATTACGAACCTTACTTTCTTTAATTATCCAACTCAAGCTAAAACGCAATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein I (T2SSI)

(68-128)

Prokaryotic N-terminal methylation motif (N_methyl)

(27-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpV Acinetobacter baumannii D1279779

79.839

80.519

0.643