Detailed information    

insolico Bioinformatically predicted

Overview

Name   xcpW   Type   Machinery gene
Locus tag   NGC85_RS08875 Genome accession   NZ_CP101115
Coordinates   1903044..1903673 (-) Length   209 a.a.
NCBI ID   WP_254730350.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   pseudopilus assembly (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1898044..1908673
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS08845 (NGC85_08845) - 1898484..1898924 (-) 441 WP_254730342.1 SRPBCC family protein -
  NGC85_RS08850 (NGC85_08850) tadA 1898991..1899500 (-) 510 WP_254730344.1 tRNA adenosine(34) deaminase TadA -
  NGC85_RS08855 (NGC85_08855) - 1899507..1900631 (-) 1125 WP_254805573.1 enoyl-CoA hydratase/isomerase family protein -
  NGC85_RS08860 (NGC85_08860) ung 1900628..1901341 (-) 714 WP_254730346.1 uracil-DNA glycosylase -
  NGC85_RS08865 (NGC85_08865) - 1901384..1901980 (-) 597 WP_005053818.1 6-carboxytetrahydropterin synthase -
  NGC85_RS08870 (NGC85_08870) gspK 1902085..1903047 (-) 963 WP_254730348.1 type II secretion system minor pseudopilin GspK -
  NGC85_RS08875 (NGC85_08875) xcpW 1903044..1903673 (-) 630 WP_254730350.1 type II secretion system minor pseudopilin GspJ Machinery gene
  NGC85_RS08880 (NGC85_08880) xcpV 1903670..1904134 (-) 465 WP_302885505.1 type II secretion system minor pseudopilin GspI Machinery gene
  NGC85_RS08885 (NGC85_08885) - 1904274..1904822 (-) 549 WP_254730352.1 type II secretion system protein -
  NGC85_RS08890 (NGC85_08890) - 1904830..1905441 (-) 612 WP_171065762.1 TetR/AcrR family transcriptional regulator -
  NGC85_RS08895 (NGC85_08895) - 1905482..1906255 (-) 774 WP_254730354.1 TatD family hydrolase -
  NGC85_RS08900 (NGC85_08900) - 1906281..1906625 (-) 345 WP_005053804.1 PilZ domain-containing protein -
  NGC85_RS08905 (NGC85_08905) - 1906947..1907459 (-) 513 WP_254730356.1 hypothetical protein -
  NGC85_RS08910 (NGC85_08910) - 1907560..1907868 (-) 309 WP_254730358.1 hypothetical protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 23985.42 Da        Isoelectric Point: 5.8356

>NTDB_id=708740 NGC85_RS08875 WP_254730350.1 1903044..1903673(-) (xcpW) [Acinetobacter sp. Z1]
MKYKKGFTLVELLVAIAIFAVLSMLGWKVFDYLLKVKDRNAEHENHLFELQDAYQQILRDSLQIIPLTANEGRELQAALV
LNDRSFAFSKAGVSDPLKQGLSPYERIEYRFDAEQKKVYRLKYSNLNIPNRVQPISSTLLQNVDDFRVTVLNPQELSQWP
ENLNDPNNVNELKKLPLGVKIQLTVAGTDYEWIYSLLNSNQLLDGQGQS

Nucleotide


Download         Length: 630 bp        

>NTDB_id=708740 NGC85_RS08875 WP_254730350.1 1903044..1903673(-) (xcpW) [Acinetobacter sp. Z1]
ATGAAATATAAGAAAGGATTTACTCTGGTTGAGTTGCTGGTTGCAATTGCTATATTTGCTGTACTTTCTATGCTCGGTTG
GAAAGTTTTTGATTATTTATTGAAAGTTAAAGATAGAAATGCTGAGCACGAAAATCACTTATTTGAACTTCAAGATGCAT
ATCAGCAAATTTTAAGAGATAGTCTGCAAATTATTCCTCTAACAGCTAATGAAGGTCGAGAATTACAAGCAGCACTTGTC
TTAAATGATCGATCTTTTGCTTTTAGTAAAGCAGGCGTATCAGATCCACTCAAACAAGGTTTATCACCCTATGAGCGAAT
TGAATATCGTTTTGATGCAGAACAAAAGAAAGTATATCGATTAAAATACTCAAATCTTAATATTCCAAATCGCGTTCAAC
CCATATCAAGCACGTTGTTACAGAATGTTGATGATTTTCGAGTTACGGTGCTAAATCCTCAGGAATTAAGCCAATGGCCT
GAAAACTTAAATGACCCCAATAATGTGAATGAATTAAAGAAATTACCTTTAGGTGTTAAAATTCAACTTACTGTTGCTGG
TACAGATTATGAATGGATTTATAGCTTACTGAATTCAAATCAATTGCTAGATGGACAGGGTCAGTCATGA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein J (T2SSJ)

(60-188)

Prokaryotic N-terminal methylation motif (N_methyl)

(1-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xcpW Acinetobacter baumannii D1279779

70.588

97.608

0.689