Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   NGC85_RS02105 Genome accession   NZ_CP101115
Coordinates   451300..451938 (-) Length   212 a.a.
NCBI ID   WP_254804697.1    Uniprot ID   -
Organism   Acinetobacter sp. Z1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 446300..456938
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NGC85_RS02070 (NGC85_02070) mlaE 446457..447236 (+) 780 WP_005052066.1 lipid asymmetry maintenance ABC transporter permease subunit MlaE -
  NGC85_RS02075 (NGC85_02075) - 447236..447913 (+) 678 WP_254804693.1 outer membrane lipid asymmetry maintenance protein MlaD -
  NGC85_RS02080 (NGC85_02080) - 447933..448565 (+) 633 WP_005059748.1 phospholipid-binding protein MlaC -
  NGC85_RS02085 (NGC85_02085) - 448580..448867 (+) 288 WP_254804694.1 lipid asymmetry maintenance protein MlaB -
  NGC85_RS02090 (NGC85_02090) - 448914..449495 (-) 582 WP_254804695.1 hypothetical protein -
  NGC85_RS02095 (NGC85_02095) - 449497..450510 (-) 1014 WP_005052061.1 CorA family divalent cation transporter -
  NGC85_RS02100 (NGC85_02100) - 450903..451298 (+) 396 WP_254804696.1 NUDIX domain-containing protein -
  NGC85_RS02105 (NGC85_02105) comF 451300..451938 (-) 639 WP_254804697.1 ComF family protein Machinery gene
  NGC85_RS02110 (NGC85_02110) recG 451931..453976 (-) 2046 WP_254804698.1 ATP-dependent DNA helicase RecG -
  NGC85_RS02115 (NGC85_02115) - 453995..454813 (+) 819 WP_254804699.1 NAD-dependent epimerase/dehydratase family protein -
  NGC85_RS02120 (NGC85_02120) - 454938..455918 (+) 981 WP_169109370.1 putative solute-binding protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24722.91 Da        Isoelectric Point: 9.8206

>NTDB_id=708730 NGC85_RS02105 WP_254804697.1 451300..451938(-) (comF) [Acinetobacter sp. Z1]
MFKNLRMGTRQLFDYFTPCNLCDIGMKKHHGICQSCWQQLPWLKQSIQRNQQQILVACHYEYPIDRIIQQFKYEQKLHHQ
RLLSGLLLQVKLPKVHAIVPMPISTDRLVERGFNQSLLLAQELSKNLHIPIWQPVQRLAQHSQKGLSRVERLENIEQQFI
ADPTQKIRYRKVLIVDDVITTGSSISALSQILEQLGCQQIYSLCLAAARNQK

Nucleotide


Download         Length: 639 bp        

>NTDB_id=708730 NGC85_RS02105 WP_254804697.1 451300..451938(-) (comF) [Acinetobacter sp. Z1]
ATGTTTAAAAACCTTAGAATGGGTACTCGTCAGCTTTTTGATTACTTCACCCCGTGTAATCTTTGTGACATTGGGATGAA
GAAACACCATGGGATTTGCCAAAGTTGCTGGCAGCAGTTGCCGTGGTTAAAGCAATCTATTCAACGCAATCAACAACAGA
TTTTGGTTGCATGTCATTATGAATATCCAATTGATCGCATTATTCAGCAATTTAAATACGAGCAAAAACTTCATCATCAA
AGGCTATTGAGTGGACTTTTATTGCAAGTCAAACTTCCAAAAGTTCATGCGATTGTACCCATGCCTATCTCAACTGATCG
CTTAGTAGAAAGAGGATTTAATCAAAGCTTATTACTTGCTCAAGAACTGAGTAAAAATTTGCATATTCCTATTTGGCAAC
CCGTACAGCGTTTAGCACAGCACTCGCAAAAAGGCTTATCCCGCGTAGAGCGATTAGAAAATATCGAACAACAATTTATA
GCTGATCCAACACAGAAAATACGTTACCGCAAAGTACTGATCGTAGATGATGTCATTACTACGGGTAGTTCGATTAGCGC
TTTGTCTCAAATCTTAGAACAGCTCGGTTGCCAACAAATTTATAGTTTATGTTTAGCAGCCGCTCGCAATCAAAAGTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(117-209)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baumannii strain A118

67.619

99.057

0.67
  comF Acinetobacter baumannii D1279779

66.667

99.057

0.66