Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7678_RS07430 Genome accession   NZ_AP023393
Coordinates   1501199..1501795 (-) Length   198 a.a.
NCBI ID   WP_014612440.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 89     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1496199..1506795
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7678_RS07415 (SDSE89_14470) - 1497609..1498304 (-) 696 WP_003057977.1 TIGR02206 family membrane protein -
  H7678_RS07420 (SDSE89_14480) murF 1498408..1499775 (-) 1368 WP_014612439.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  H7678_RS07425 (SDSE89_14490) - 1499981..1501027 (-) 1047 WP_003060500.1 D-alanine--D-alanine ligase -
  H7678_RS07430 (SDSE89_14500) recR 1501199..1501795 (-) 597 WP_014612440.1 recombination mediator RecR Machinery gene
  H7678_RS07435 (SDSE89_14510) pbp2b 1501807..1503861 (-) 2055 WP_184010274.1 penicillin-binding protein PBP2B -
  H7678_RS07440 (SDSE89_14520) - 1503968..1504738 (-) 771 WP_003053941.1 formate/nitrite transporter family protein -
  H7678_RS07445 (SDSE89_14530) - 1504865..1505407 (-) 543 WP_003053939.1 hypothetical protein -
  H7678_RS07450 (SDSE89_14540) - 1505509..1506030 (-) 522 WP_003053932.1 transcription repressor NadR -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21613.77 Da        Isoelectric Point: 4.7577

>NTDB_id=70856 H7678_RS07430 WP_014612440.1 1501199..1501795(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MFYPTPIAKLIESYSKLPGIGVKTATRLAFYTIGMSDEAVNDFAKNLLAAKRELTYCSICGNLTDDDPCSICTDTSRDQT
TILVVEDAKDVSAMEKIQEYHGYYHVLHGLISPMNGVGPDDINLKSLITRLMDGKVTEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=70856 H7678_RS07430 WP_014612440.1 1501199..1501795(-) (recR) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
GTGTTTTACCCAACCCCTATTGCAAAATTAATCGAAAGTTATTCCAAGCTCCCAGGAATTGGGGTAAAAACGGCAACTAG
ACTTGCCTTTTACACAATTGGAATGTCTGACGAGGCTGTCAATGACTTTGCTAAAAATTTATTGGCAGCTAAAAGAGAAT
TAACCTATTGTTCCATTTGTGGCAACCTGACAGATGATGATCCTTGTTCTATCTGCACAGATACAAGTCGTGACCAGACA
ACGATTCTTGTGGTGGAAGATGCTAAAGATGTTTCTGCTATGGAAAAAATTCAAGAGTATCATGGTTATTACCATGTGCT
GCATGGTTTAATTTCACCGATGAATGGTGTTGGTCCGGATGATATCAATCTAAAAAGTTTAATTACTCGTTTAATGGACG
GTAAAGTGACTGAAGTTATCATAGCGACCAATGCCACAGCTGATGGCGAAGCAACATCTATGTATATCTCACGGGTCTTG
AAACCAGCAGGAATCAAAGTTACCCGCTTAGCAAGAGGGCTCGCAGTGGGGTCAGATATTGAATACGCAGATGAAGTCAC
CTTGTTAAGAGCTATTGAAAACCGCACAGAACTTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

50.256

98.485

0.495