Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   H7678_RS02920 Genome accession   NZ_AP023393
Coordinates   552394..553203 (+) Length   269 a.a.
NCBI ID   WP_003059746.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain 89     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 547394..558203
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7678_RS02895 (SDSE89_05270) - 547767..548468 (-) 702 WP_003057191.1 amino acid ABC transporter permease -
  H7678_RS02900 (SDSE89_05280) - 548482..549282 (-) 801 WP_003057243.1 transporter substrate-binding domain-containing protein -
  H7678_RS02905 (SDSE89_05290) - 549282..550076 (-) 795 WP_003057217.1 amino acid ABC transporter ATP-binding protein -
  H7678_RS02910 (SDSE89_05300) yycF 550335..551045 (+) 711 WP_003049952.1 response regulator YycF -
  H7678_RS02915 (SDSE89_05310) vicK 551038..552390 (+) 1353 WP_003060939.1 cell wall metabolism sensor histidine kinase VicK Regulator
  H7678_RS02920 (SDSE89_05320) vicX 552394..553203 (+) 810 WP_003059746.1 MBL fold metallo-hydrolase Regulator
  H7678_RS02925 (SDSE89_05330) rnc 553961..554653 (+) 693 WP_003057240.1 ribonuclease III -
  H7678_RS02930 (SDSE89_05340) smc 554654..558199 (+) 3546 WP_003060910.1 chromosome segregation protein SMC -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 30157.38 Da        Isoelectric Point: 6.0739

>NTDB_id=70826 H7678_RS02920 WP_003059746.1 552394..553203(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
MIESGFKYSILASGSTGNCFYLETPKKRLLIDAGLTGKKITSLLAEIDRKPEDLDAILITHEHSDHIKGVGVMARKYHLD
VYANEKTWQLMDERNMLGKLDASQKHIFQRDKMLTFGDVDIESFGVSHDAVDPQFYRIMKDNKSFVMLTDTGYVSDRMTG
IIENADGYLIESNHDIEILRSGSYPWSLKQRILSDMGHLSNEDGAGAMIRSLGHKTKKIYLGHLSKENNIKELAHMTMVN
QLAMADLAVGTDFTVHDTSPDTACPLTDI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=70826 H7678_RS02920 WP_003059746.1 552394..553203(+) (vicX) [Streptococcus dysgalactiae subsp. equisimilis strain 89]
ATGATTGAAAGTGGTTTTAAATACAGTATTTTAGCATCCGGATCCACAGGCAATTGTTTTTATTTAGAAACACCTAAAAA
GCGATTATTAATTGACGCGGGGTTGACTGGTAAGAAAATCACCAGTCTCCTTGCTGAAATTGACCGCAAGCCTGAAGATT
TAGATGCTATTTTGATTACACATGAACATTCAGATCATATCAAAGGAGTGGGAGTGATGGCTCGCAAGTACCATTTGGAT
GTTTATGCCAACGAAAAAACATGGCAGTTGATGGATGAGCGTAATATGCTCGGGAAGCTTGATGCCTCCCAAAAACATAT
TTTCCAAAGAGATAAGATGTTGACCTTTGGAGATGTTGACATTGAAAGTTTTGGCGTTAGTCACGATGCGGTTGATCCTC
AGTTTTACCGCATTATGAAGGACAACAAATCGTTTGTGATGCTGACTGATACAGGTTATGTCAGTGACCGAATGACAGGT
ATTATTGAAAATGCAGATGGCTACTTGATTGAGTCCAATCATGACATTGAAATTTTACGGTCGGGTTCTTACCCTTGGAG
TTTAAAACAACGCATTTTGTCAGACATGGGCCATTTGTCAAATGAAGATGGCGCTGGAGCTATGATTAGAAGTTTAGGGC
ATAAGACCAAAAAAATCTATTTGGGCCATTTGAGTAAAGAAAATAACATCAAAGAGTTGGCTCACATGACCATGGTGAAC
CAATTAGCCATGGCAGATTTAGCGGTAGGTACAGACTTTACTGTTCATGACACTTCCCCAGACACAGCTTGTCCCTTGAC
GGATATTTAA

Domains

Predicted by InterProScan.

Beta-lactamase superfamily domain (Lactamase_B_2)

(28-217)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

76.58

100

0.766

Multiple sequence alignment