Detailed information NTG0708233

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: NMD16_RS21480
• Genome accession: NZ_CP101027
• Coordinates: 4326302..4327102 (+)
• Length: 266 a.a.
• NCBI ID: WP_004145898.1
• Uniprot ID: -
• Organism: Klebsiella pneumoniae strain OT202
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4321302..4332102

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
NMD16_RS21445 (NMD16_21385)	gspH	4321458..4321973 (+)	516	WP_065901384.1	type II secretion system minor pseudopilin GspH	-
NMD16_RS21450 (NMD16_21390)	gspI	4321970..4322335 (+)	366	WP_002889025.1	type II secretion system minor pseudopilin GspI	-
NMD16_RS21455 (NMD16_21395)	gspJ	4322332..4322928 (+)	597	WP_032422017.1	type II secretion system minor pseudopilin GspJ	-
NMD16_RS21460 (NMD16_21400)	gspK	4322925..4323911 (+)	987	WP_370608523.1	type II secretion system minor pseudopilin GspK	-
NMD16_RS21465 (NMD16_21405)	gspL	4323898..4325091 (+)	1194	WP_004191957.1	type II secretion system protein GspL	-
NMD16_RS21470 (NMD16_21410)	-	4325084..4325569 (+)	486	WP_318041848.1	type II secretion system protein M	-
NMD16_RS21475 (NMD16_21415)	-	4325559..4326305 (+)	747	WP_370608524.1	type II secretion system protein N	-
NMD16_RS21480 (NMD16_21420)	pilD	4326302..4327102 (+)	801	WP_004145898.1	A24 family peptidase	Machinery gene
NMD16_RS21485 (NMD16_21425)	hrpB	4327150..4329579 (-)	2430	WP_370608525.1	ATP-dependent helicase HrpB	-
NMD16_RS21490 (NMD16_21430)	thpR	4329652..4330188 (+)	537	WP_004177389.1	RNA 2',3'-cyclic phosphodiesterase	-
NMD16_RS21495 (NMD16_21435)	sfsA	4330188..4330904 (+)	717	WP_002888848.1	DNA/RNA nuclease SfsA	-
NMD16_RS21500 (NMD16_21440)	dksA	4331067..4331522 (+)	456	WP_002888845.1	RNA polymerase-binding protein DksA	-

Sequence

Protein

• Length: 266 a.a.
• Molecular weight: 29389.01 Da
• Isoelectric Point: 8.8894

>NTDB_id=708233 NMD16_RS21480 WP_004145898.1 4326302..4327102(+) (pilD) [Klebsiella pneumoniae strain OT202]
MTTLAALSLHFPFVWYGFLLLFGLALGSFYNVVIYRLPRMLTQTADDERITLSTPGSSCPQCRQPIAWRDNIPLLSFLWL
GRRARCCQAPIAWSYPLTELATGLLFILAGALLAPGLPLAGGLVLLSFLLILARIDARTQLLPDRLTLPLLWAGLLFNLN
EVYIALPDAVAGAMAGYLALWSVYWLFRLLTGKEALGYGDFKLLAALGAWCGWQVLPQVLLLASASGLVWTLLQRLWTRQ
SLQQPLAFGPWLALAGGGIFLWQQMV

Nucleotide

• Length: 801 bp

>NTDB_id=708233 NMD16_RS21480 WP_004145898.1 4326302..4327102(+) (pilD) [Klebsiella pneumoniae strain OT202]
ATGACGACACTAGCCGCGTTATCGCTGCACTTTCCCTTTGTCTGGTATGGCTTTCTGCTGCTGTTCGGCCTGGCGCTGGG
CAGCTTTTACAATGTGGTGATCTATCGTCTGCCGCGCATGTTGACCCAGACCGCGGACGACGAGCGGATAACCCTCAGCA
CCCCGGGCTCTTCCTGCCCGCAGTGCCGCCAGCCGATCGCCTGGCGGGACAATATCCCGCTGCTCAGTTTCCTCTGGCTG
GGCCGTCGCGCCCGCTGCTGTCAGGCGCCCATCGCGTGGAGCTATCCGCTGACCGAGCTGGCCACCGGCCTGCTGTTTAT
CCTCGCCGGAGCTTTGCTGGCGCCGGGCCTGCCGCTGGCGGGCGGCCTGGTGCTGCTCTCGTTCCTGCTGATACTGGCGC
GGATTGACGCCCGGACCCAGCTGCTGCCCGATCGCCTGACTCTGCCCCTGCTGTGGGCCGGGCTGCTGTTCAATCTTAAC
GAGGTGTACATTGCCCTGCCGGATGCGGTCGCCGGGGCGATGGCCGGTTATCTGGCGCTGTGGTCGGTCTACTGGCTGTT
CCGCCTGCTGACCGGGAAAGAGGCGCTGGGCTATGGCGATTTTAAGCTGCTGGCGGCGCTGGGCGCCTGGTGCGGCTGGC
AGGTTCTGCCGCAGGTGCTGTTGCTCGCTTCGGCCAGCGGGCTGGTGTGGACCCTGCTGCAACGCCTGTGGACCCGGCAG
TCGCTGCAGCAGCCGCTGGCCTTCGGCCCCTGGCTGGCGCTGGCCGGCGGGGGTATTTTTCTCTGGCAGCAGATGGTCTA
G

Domains

Predicted by InterproScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (21-109)

• Type IV leader peptidase family (Peptidase_A24) (123-231)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Vibrio cholerae strain A1552	49.434	99.624	0.492
pilD	Vibrio campbellii strain DS40M4	46.182	100	0.477
pilD	Acinetobacter nosocomialis M2	46.008	98.872	0.455
pilD	Acinetobacter baumannii D1279779	45.247	98.872	0.447
pilD	Neisseria gonorrhoeae MS11	43.295	98.12	0.425