Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxO   Type   Regulator
Locus tag   PIC92_RS24240 Genome accession   NZ_CP116115
Coordinates   4958046..4959455 (-) Length   469 a.a.
NCBI ID   WP_001315107.1    Uniprot ID   A0A0H2Z4V2
Organism   Escherichia coli strain DETEC-P793     
Function   promote HapR production (predicted from homology)   
Competence regulation

Genomic Context

Location: 4953046..4964455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC92_RS24215 (PIC92_24215) yihA 4954306..4954938 (-) 633 WP_000183349.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  PIC92_RS24220 (PIC92_24220) - 4955235..4955401 (+) 167 Protein_4742 hypothetical protein -
  PIC92_RS24225 (PIC92_24225) yihI 4955520..4956029 (+) 510 WP_001295266.1 Der GTPase-activating protein YihI -
  PIC92_RS24230 (PIC92_24230) hemN 4956218..4957591 (+) 1374 WP_000116096.1 oxygen-independent coproporphyrinogen III oxidase -
  PIC92_RS24235 (PIC92_24235) yshB 4957824..4957934 (-) 111 WP_000893994.1 YshB family small membrane protein -
  PIC92_RS24240 (PIC92_24240) luxO 4958046..4959455 (-) 1410 WP_001315107.1 nitrogen regulation protein NR(I) Regulator
  PIC92_RS24245 (PIC92_24245) glnL 4959467..4960516 (-) 1050 WP_001540261.1 nitrogen regulation protein NR(II) -
  PIC92_RS24250 (PIC92_24250) glnA 4960690..4962099 (-) 1410 WP_001271717.1 glutamate--ammonia ligase -
  PIC92_RS24255 (PIC92_24255) typA 4962472..4964295 (+) 1824 WP_000570668.1 ribosome-dependent GTPase TypA -

Sequence

Protein


Download         Length: 469 a.a.        Molecular weight: 52302.79 Da        Isoelectric Point: 6.5091

>NTDB_id=708136 PIC92_RS24240 WP_001315107.1 4958046..4959455(-) (luxO) [Escherichia coli strain DETEC-P793]
MQRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTPDVLLSDIRMPGMDGLALLKQIKQRHPMLPVII
MTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISHYQEQQQPRNVQLNGPTTDIIGEAPAMQDVFRIIGRLSRS
SISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLIESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDE
IGDMPLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRLNVIRVHLPPLRERREDIPR
LARHFLQVAARELGVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMAAGQEVLIQDLPGELFESNVPESTSHMQPD
SWATLLAQWADRALRSGHQNLLSEAQPELERTLLTTALRHTQGHKQEAARLLGWGRNTLTRKLKELGME

Nucleotide


Download         Length: 1410 bp        

>NTDB_id=708136 PIC92_RS24240 WP_001315107.1 4958046..4959455(-) (luxO) [Escherichia coli strain DETEC-P793]
ATGCAACGAGGGATAGTCTGGGTAGTCGATGACGATAGTTCCATCCGTTGGGTGCTTGAACGTGCGCTCGCTGGAGCGGG
TTTAACCTGTACGACATTTGAGAACGGCGCGGAAGTACTGGAGGCGCTGGCGAGCAAAACGCCGGATGTGCTGCTTTCAG
ATATCCGTATGCCGGGAATGGACGGGCTGGCGCTGCTCAAGCAGATTAAACAGCGCCATCCGATGCTTCCGGTCATCATT
ATGACCGCACATTCCGATCTGGATGCTGCCGTCAGCGCCTATCAACAAGGGGCATTTGATTATCTGCCCAAACCGTTTGA
TATCGACGAAGCCGTGGCGCTGGTTGAGCGCGCCATCAGTCATTACCAGGAACAGCAGCAGCCGCGTAATGTTCAGCTTA
ACGGCCCAACGACCGATATCATCGGTGAAGCGCCAGCCATGCAGGACGTGTTCCGGATTATCGGTCGGCTTTCGCGTTCT
TCTATTAGCGTGCTGATTAACGGCGAATCCGGCACCGGTAAAGAACTGGTCGCTCATGCCCTGCATCGCCACAGTCCGCG
AGCCAAAGCGCCGTTTATCGCGCTCAATATGGCGGCTATCCCGAAGGATTTGATCGAATCCGAACTGTTTGGTCACGAGA
AAGGCGCATTTACCGGCGCGAATACCATTCGTCAGGGGCGTTTTGAACAGGCTGATGGCGGTACATTATTTCTCGATGAA
ATTGGCGATATGCCGCTGGATGTGCAGACGCGTTTGCTGCGCGTGCTGGCAGACGGTCAGTTTTATCGCGTTGGCGGCTA
TGCGCCGGTGAAAGTAGATGTGCGGATTATCGCTGCCACTCACCAGAATCTTGAACAGCGGGTGCAGGAAGGCAAGTTCC
GTGAGGATCTGTTCCACCGCCTGAACGTCATCCGCGTTCATCTGCCGCCGCTGCGCGAACGTCGGGAAGATATTCCCCGT
CTGGCGCGCCATTTTTTACAGGTTGCCGCGCGAGAGCTGGGCGTAGAAGCGAAGTTGCTGCATCCGGAAACCGAAGCCGC
GCTGACGCGTCTGGCGTGGCCAGGCAACGTGCGCCAGCTGGAAAACACCTGTCGCTGGCTAACGGTGATGGCCGCCGGGC
AGGAAGTGTTGATTCAGGATTTGCCTGGCGAACTGTTTGAATCAAACGTACCGGAAAGCACTTCACACATGCAGCCGGAC
AGTTGGGCAACGCTGTTAGCACAGTGGGCAGACAGAGCGCTGCGTTCCGGTCATCAAAACCTGCTTTCCGAAGCACAGCC
AGAGCTGGAACGGACGTTACTGACCACCGCGCTGCGACATACGCAGGGGCATAAACAGGAAGCGGCGCGGCTACTTGGCT
GGGGTCGCAACACCCTGACGCGTAAGTTAAAAGAGCTGGGGATGGAGTGA

Domains

Predicted by InterProScan.

Bacterial regulatory protein, Fis family (HTH_8)

(427-466)

Response regulator receiver domain (Response_reg)

(6-115)

Sigma-54 interaction domain (Sigma54_activat)

(140-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2Z4V2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxO Vibrio cholerae strain A1552

39.655

98.934

0.392
  pilR Pseudomonas aeruginosa PAK

38.854

100

0.39