Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PIC84_RS05460 Genome accession   NZ_CP116110
Coordinates   1112982..1113719 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain DETEC-P80     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1107982..1118719
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC84_RS05430 (PIC84_05430) yfiL 1108140..1108505 (-) 366 WP_000976004.1 DUF2799 domain-containing protein -
  PIC84_RS05435 (PIC84_05435) aroF 1108715..1109785 (+) 1071 WP_001168037.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PIC84_RS05440 (PIC84_05440) tyrA 1109796..1110917 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PIC84_RS05445 (PIC84_05445) pheA 1110960..1112120 (-) 1161 WP_023281432.1 bifunctional chorismate mutase/prephenate dehydratase -
  PIC84_RS05450 (PIC84_05450) pheL 1112219..1112266 (-) 48 WP_010723158.1 phe operon leader peptide -
  PIC84_RS05455 (PIC84_05455) raiA 1112370..1112711 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PIC84_RS05460 (PIC84_05460) comL 1112982..1113719 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PIC84_RS05465 (PIC84_05465) rluD 1113854..1114834 (+) 981 WP_000079100.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PIC84_RS05470 (PIC84_05470) yfiH 1114831..1115562 (+) 732 WP_000040169.1 purine nucleoside phosphorylase YfiH -
  PIC84_RS05475 (PIC84_05475) clpC 1115692..1118265 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=707994 PIC84_RS05460 WP_000197686.1 1112982..1113719(-) (comL) [Escherichia coli strain DETEC-P80]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=707994 PIC84_RS05460 WP_000197686.1 1112982..1113719(-) (comL) [Escherichia coli strain DETEC-P80]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376