Detailed information
Bioinformatically predicted
Overview
| Name | comB | Type | Machinery gene |
| Locus tag | K6J54_RS02955 | Genome accession | NZ_AP018766 |
| Coordinates | 598768..599274 (+) | Length | 168 a.a. |
| NCBI ID | WP_011272049.1 | Uniprot ID | Q4QNA7 |
| Organism | Haemophilus influenzae strain CHBN-II-3 isolate 13H41 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 593768..604274
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| K6J54_RS02935 (CHBNII3_05560) | - | 593871..594200 (-) | 330 | WP_005629464.1 | YbaB/EbfC family nucleoid-associated protein | - |
| K6J54_RS02940 (CHBNII3_05570) | - | 594359..595204 (-) | 846 | WP_221265039.1 | 23S rRNA (adenine(2030)-N(6))-methyltransferase RlmJ | - |
| K6J54_RS02945 (CHBNII3_05580) | - | 595277..597871 (-) | 2595 | WP_042593320.1 | penicillin-binding protein 1A | - |
| K6J54_RS02950 (CHBNII3_05590) | comA | 597970..598767 (+) | 798 | WP_011272050.1 | pilus assembly protein PilM | Machinery gene |
| K6J54_RS02955 (CHBNII3_05600) | comB | 598768..599274 (+) | 507 | WP_011272049.1 | competence protein ComB | Machinery gene |
| K6J54_RS02960 (CHBNII3_05610) | comC | 599271..599792 (+) | 522 | WP_011272048.1 | competence protein ComC | Machinery gene |
| K6J54_RS02965 (CHBNII3_05620) | comD | 599789..600202 (+) | 414 | WP_011272047.1 | pilus assembly protein PilP | Machinery gene |
| K6J54_RS02970 (CHBNII3_05630) | comE | 600212..601549 (+) | 1338 | WP_011272046.1 | type IV pilus secretin PilQ | Machinery gene |
| K6J54_RS02975 (CHBNII3_05640) | - | 601562..602248 (+) | 687 | WP_011272045.1 | ComF family protein | - |
| K6J54_RS02980 (CHBNII3_05650) | nfuA | 602324..602920 (+) | 597 | WP_005649300.1 | Fe-S biogenesis protein NfuA | - |
| K6J54_RS02985 (CHBNII3_05660) | nudC | 602987..603781 (+) | 795 | WP_005686893.1 | NAD(+) diphosphatase | - |
Sequence
Protein
Download Length: 168 a.a. Molecular weight: 19697.54 Da Isoelectric Point: 7.4684
>NTDB_id=70789 K6J54_RS02955 WP_011272049.1 598768..599274(+) (comB) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
MSMNLLPWRTYQHQKRLRRLAFYIALFILLAINLMLAFSNLIEQQKQNLQAQQTSFEQLNQQLHKTTMQIDQLRSAVKVG
EVLTSIPNEQVKKSLQQLSELPFQQGELNKFKQDANNLSLEGNAQDQTEFELIHQFLKKHFPNVKLSQVQPEQDTLFFHF
DVEQGAEK
Nucleotide
Download Length: 507 bp
>NTDB_id=70789 K6J54_RS02955 WP_011272049.1 598768..599274(+) (comB) [Haemophilus influenzae strain CHBN-II-3 isolate 13H41]
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
ATGTCGATGAATTTATTGCCTTGGCGTACTTATCAACATCAAAAGCGTTTACGTCGTTTAGCTTTTTATATCGCTTTATT
TATCTTGCTTGCTATTAATTTAATGTTGGCTTTTAGCAATTTGATTGAACAACAGAAACAAAATTTGCAAGCGCAGCAAA
CATCTTTTGAACAACTTAATCAGCAACTTCACAAAACTACCATGCAAATTGATCAGTTACGCAGTGCGGTGAAAGTTGGT
GAAGTTTTGACATCTATTCCCAACGAGCAAGTAAAAAAGAGTTTACAACAGCTAAGTGAATTACCTTTTCAACAAGGAGA
ACTGAATAAATTTAAACAAGATGCCAATAACTTAAGTTTGGAAGGTAACGCGCAAGATCAAACAGAATTTGAACTGATTC
ATCAATTTTTAAAGAAACATTTTCCCAATGTGAAATTAAGTCAGGTTCAACCTGAACAAGATACATTGTTTTTTCACTTT
GATGTGGAACAAGGGGCGGAAAAATGA
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB | Haemophilus influenzae 86-028NP |
100 |
100 |
1 |
| comB | Haemophilus influenzae Rd KW20 |
98.81 |
100 |
0.988 |