Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PIC52_RS20325 Genome accession   NZ_CP116100
Coordinates   4199872..4200609 (-) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain DETEC-P881     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4194872..4205609
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC52_RS20295 (PIC52_20295) yfiL 4195031..4195396 (-) 366 WP_001296308.1 DUF2799 domain-containing protein -
  PIC52_RS20300 (PIC52_20300) aroF 4195606..4196676 (+) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PIC52_RS20305 (PIC52_20305) tyrA 4196687..4197808 (+) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PIC52_RS20310 (PIC52_20310) pheA 4197851..4199011 (-) 1161 WP_000200140.1 bifunctional chorismate mutase/prephenate dehydratase -
  PIC52_RS20315 (PIC52_20315) pheL 4199110..4199157 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  PIC52_RS20320 (PIC52_20320) raiA 4199261..4199602 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PIC52_RS20325 (PIC52_20325) comL 4199872..4200609 (-) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PIC52_RS20330 (PIC52_20330) rluD 4200744..4201724 (+) 981 WP_000079111.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PIC52_RS20335 (PIC52_20335) yfiH 4201721..4202452 (+) 732 WP_000040156.1 purine nucleoside phosphorylase YfiH -
  PIC52_RS20340 (PIC52_20340) clpC 4202582..4205155 (+) 2574 WP_001605977.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=707797 PIC52_RS20325 WP_000197686.1 4199872..4200609(-) (comL) [Escherichia coli strain DETEC-P881]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=707797 PIC52_RS20325 WP_000197686.1 4199872..4200609(-) (comL) [Escherichia coli strain DETEC-P881]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTCGATGACAGTGCACTGCAAGGGTTCTTTGGCGTCGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTTGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376