Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   PIC22_RS09670 Genome accession   NZ_CP116088
Coordinates   1961468..1962205 (+) Length   245 a.a.
NCBI ID   WP_000197686.1    Uniprot ID   P0AC03
Organism   Escherichia coli strain DETEC-S565     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1956468..1967205
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIC22_RS09655 (PIC22_09650) clpC 1956922..1959495 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  PIC22_RS09660 (PIC22_09655) yfiH 1959625..1960356 (-) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  PIC22_RS09665 (PIC22_09660) rluD 1960353..1961333 (-) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  PIC22_RS09670 (PIC22_09665) comL 1961468..1962205 (+) 738 WP_000197686.1 outer membrane protein assembly factor BamD Machinery gene
  PIC22_RS09675 (PIC22_09670) raiA 1962476..1962817 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  PIC22_RS09680 (PIC22_09675) pheL 1962921..1962968 (+) 48 WP_001700969.1 pheA operon leader peptide PheL -
  PIC22_RS09685 (PIC22_09680) pheA 1963067..1964227 (+) 1161 WP_000200100.1 bifunctional chorismate mutase/prephenate dehydratase -
  PIC22_RS09690 (PIC22_09685) tyrA 1964270..1965391 (-) 1122 WP_000225221.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  PIC22_RS09695 (PIC22_09690) aroF 1965402..1966472 (-) 1071 WP_001168044.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  PIC22_RS09700 (PIC22_09695) yfiL 1966682..1967047 (+) 366 WP_000976004.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27829.40 Da        Isoelectric Point: 6.4874

>NTDB_id=707589 PIC22_RS09670 WP_000197686.1 1961468..1962205(+) (comL) [Escherichia coli strain DETEC-S565]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=707589 PIC22_RS09670 WP_000197686.1 1961468..1962205(+) (comL) [Escherichia coli strain DETEC-S565]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCATATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTCGATCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0AC03

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376