Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   H7679_RS03295 Genome accession   NZ_AP023392
Coordinates   641398..641994 (+) Length   198 a.a.
NCBI ID   WP_024399909.1    Uniprot ID   -
Organism   Streptococcus suis strain DAT300     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 636398..646994
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H7679_RS03280 (DAT300_05990) vicX 636680..637483 (+) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator
  H7679_RS03285 (DAT300_06000) vga(F) 637843..639228 (+) 1386 WP_014637680.1 ABC-F type ribosomal protection protein Vga(F) -
  H7679_RS03290 (DAT300_06010) pbp2b 639320..641389 (+) 2070 WP_014637681.1 penicillin-binding protein PBP2B -
  H7679_RS03295 (DAT300_06020) recR 641398..641994 (+) 597 WP_024399909.1 recombination mediator RecR Machinery gene
  H7679_RS03300 (DAT300_06030) - 642099..643145 (+) 1047 WP_184495967.1 D-alanine--D-alanine ligase -
  H7679_RS03305 (DAT300_06040) - 643384..643764 (+) 381 WP_024382539.1 OsmC family protein -
  H7679_RS03310 (DAT300_06050) - 643766..644842 (+) 1077 WP_184495969.1 ABC transporter permease -
  H7679_RS03315 (DAT300_06060) - 644852..645520 (+) 669 WP_024395247.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21607.71 Da        Isoelectric Point: 4.5456

>NTDB_id=70736 H7679_RS03295 WP_024399909.1 641398..641994(+) (recR) [Streptococcus suis strain DAT300]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLTYCSVCGNLTDQDPCGICQDSSRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDGINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=70736 H7679_RS03295 WP_024399909.1 641398..641994(+) (recR) [Streptococcus suis strain DAT300]
ATGCTATATCCTACACCCATTGCCAAGTTGATTGACAGTTACTCCAAATTACCAGGAATCGGTATTAAGACAGCTACGCG
GCTGGCCTTCTATACCATTGGTATGGAAGATGATGTGGTCAATGAATTTGCAAAAAATCTCTTGGCTGCCAAGAGGGATT
TGACCTATTGTTCGGTTTGTGGCAATCTGACAGACCAGGACCCTTGCGGTATTTGTCAAGATAGCAGTCGTGACCAGTCG
ACTATTTTAATTGTAGAAGACAGTCGAGATGTGACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGGTATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATAAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAATCGTACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

64.646

100

0.646
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment