Detailed information    

insolico Bioinformatically predicted

Overview

Name   letA   Type   Regulator
Locus tag   PIH14_RS05075 Genome accession   NZ_CP116046
Coordinates   1008512..1009168 (+) Length   218 a.a.
NCBI ID   WP_000611336.1    Uniprot ID   -
Organism   Escherichia coli strain EC812A1     
Function   regulate competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1003512..1014168
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIH14_RS05045 (PIH14_05045) dcyD 1004392..1005378 (+) 987 WP_001128215.1 D-cysteine desulfhydrase -
  PIH14_RS05050 (PIH14_05050) tcyL 1005393..1006061 (+) 669 WP_001158220.1 cystine ABC transporter permease -
  PIH14_RS05055 (PIH14_05055) tcyN 1006058..1006810 (+) 753 WP_001272994.1 L-cystine ABC transporter ATP-binding protein TcyN -
  PIH14_RS05060 (PIH14_05060) sdiA 1007040..1007762 (+) 723 WP_271293165.1 transcriptional regulator SdiA -
  PIH14_RS05065 (PIH14_05065) yecF 1007829..1008053 (-) 225 WP_000106474.1 DUF2594 family protein YecF -
  PIH14_RS05070 (PIH14_05070) yecU 1008040..1008216 (-) 177 WP_000590347.1 protein YecU -
  PIH14_RS24500 - 1008254..1008370 (-) 117 WP_001302039.1 hypothetical protein -
  PIH14_RS05075 (PIH14_05075) letA 1008512..1009168 (+) 657 WP_000611336.1 UvrY/SirA/GacA family response regulator transcription factor Regulator
  PIH14_RS05080 (PIH14_05080) uvrC 1009165..1010997 (+) 1833 WP_001283421.1 excinuclease ABC subunit UvrC Machinery gene
  PIH14_RS05085 (PIH14_05085) pgsA 1011054..1011602 (+) 549 WP_001160187.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  PIH14_RS05105 (PIH14_05105) yecA 1012252..1012917 (+) 666 WP_001556671.1 UPF0149 family protein YecA -

Sequence

Protein


Download         Length: 218 a.a.        Molecular weight: 23878.58 Da        Isoelectric Point: 6.6397

>NTDB_id=707156 PIH14_RS05075 WP_000611336.1 1008512..1009168(+) (letA) [Escherichia coli strain EC812A1]
MINVLLVDDHELVRAGIRRILEDIKGIKVVGEASCGEDAVKWCRTNAVDVVLMDMSMPGIGGLEATRKIARSTADVKIIM
LTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVYSGQRYIASDIAQQMALSQIEPEKTESPFASLSERELQIMLM
ITNGQKVNEISEQLNLSPKTVNSYRYRMFSKLNIHGDVELTHLAIRHGLCNAETLSSQ

Nucleotide


Download         Length: 657 bp        

>NTDB_id=707156 PIH14_RS05075 WP_000611336.1 1008512..1009168(+) (letA) [Escherichia coli strain EC812A1]
TTGATCAACGTTCTACTTGTTGATGACCACGAACTGGTGCGCGCAGGGATACGACGCATTCTGGAAGATATAAAGGGTAT
AAAAGTCGTCGGTGAGGCATCGTGCGGTGAAGACGCCGTTAAGTGGTGCCGGACAAATGCCGTTGACGTGGTGCTAATGG
ACATGAGTATGCCGGGCATTGGCGGTCTTGAGGCGACGCGTAAAATCGCGCGTTCCACAGCTGATGTCAAAATCATCATG
CTTACCGTCCATACAGAAAACCCTTTACCAGCGAAAGTCATGCAGGCCGGTGCTGCGGGCTACCTCAGCAAAGGCGCGGC
TCCGCAGGAAGTCGTGAGTGCGATTCGTTCTGTCTATTCTGGGCAGCGTTACATTGCTTCTGACATCGCTCAACAAATGG
CGTTAAGCCAGATCGAACCAGAAAAAACAGAAAGCCCATTTGCCAGTTTGTCTGAACGTGAATTGCAGATTATGCTGATG
ATCACCAATGGCCAGAAGGTCAATGAGATCTCAGAACAGCTCAATCTCAGTCCGAAAACGGTGAACAGCTACCGCTATCG
TATGTTCAGTAAACTAAACATTCATGGCGATGTTGAGCTGACTCACCTGGCAATTCGCCATGGTCTGTGTAATGCGGAGA
CATTATCAAGTCAGTGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-115)

Bacterial regulatory proteins, luxR family (GerE)

(149-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  letA Legionella pneumophila str. Paris

51.208

94.954

0.486
  letA Legionella pneumophila strain ERS1305867

51.208

94.954

0.486