Detailed information    

insolico Bioinformatically predicted

Overview

Name   sepM   Type   Regulator
Locus tag   PF977_RS14360 Genome accession   NZ_CP116012
Coordinates   2738283..2739308 (-) Length   341 a.a.
NCBI ID   WP_003245451.1    Uniprot ID   O34470
Organism   Bacillus subtilis strain SRCM124333     
Function   processing of CSP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2733283..2744308
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS14325 (PF977_14325) panEA 2733768..2734664 (-) 897 WP_015252144.1 2-dehydropantoate 2-reductase -
  PF977_RS14330 (PF977_14330) ylbP 2734824..2735306 (+) 483 WP_014476736.1 N-acetyltransferase -
  PF977_RS14335 (PF977_14335) gerR 2735363..2735944 (-) 582 WP_015715842.1 sporulation specific transcriptional regulator GerR -
  PF977_RS14340 (PF977_14340) rpmF 2736090..2736269 (-) 180 WP_003154457.1 50S ribosomal protein L32 -
  PF977_RS14345 (PF977_14345) ylbN 2736291..2736809 (-) 519 WP_014479718.1 YceD family protein -
  PF977_RS14350 (PF977_14350) - 2736837..2737022 (+) 186 WP_003232215.1 hypothetical protein -
  PF977_RS14355 (PF977_14355) tmcAL 2737019..2738266 (+) 1248 WP_015715841.1 nucleotidyltransferase -
  PF977_RS14360 (PF977_14360) sepM 2738283..2739308 (-) 1026 WP_003245451.1 protease DdcP Regulator
  PF977_RS14365 (PF977_14365) ylbK 2739310..2740092 (-) 783 WP_003232221.1 patatin family protein -
  PF977_RS14370 (PF977_14370) spoVV 2740273..2741499 (+) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  PF977_RS14375 (PF977_14375) coaD 2741510..2741995 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  PF977_RS14380 (PF977_14380) rsmD 2742000..2742554 (-) 555 WP_015715840.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PF977_RS14385 (PF977_14385) ylbG 2742876..2743148 (-) 273 WP_015715839.1 YlbG family protein -
  PF977_RS14390 (PF977_14390) ylbF 2743203..2743652 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  PF977_RS14395 (PF977_14395) ylbE 2743768..2744007 (-) 240 WP_003232231.1 YlbE-like family protein -

Sequence

Protein


Download         Length: 341 a.a.        Molecular weight: 37651.23 Da        Isoelectric Point: 6.5347

>NTDB_id=706917 PF977_RS14360 WP_003245451.1 2738283..2739308(-) (sepM) [Bacillus subtilis strain SRCM124333]
MLRKKHFSWMLVILILIAVLSFIKLPYYITKPGEATELASLIKVEGGYPEKGSLSLMTVKVGPANPFTYVWAKMHPYYEI
VPDESIKEEGESDKEYMKRQLQMMKSSQENAVIAAYQKAGKKVSYSFNGIYASSVVENMPAKGKIEVGDKIISADGKNYQ
SAEKLIDYISSKKAGDKVTLKIEREEKEKRVTLTLKQFPDEPDRAGIGVSLYTDRNVKVEPDIDFEIENIGGPSAGLMMS
LEIYNQLTKPDETKGYDIAGTGTIDVDGKVGPIGGIDQKVVAADKAGKDIFFAPNQNGASNSDYKNAVKTAKDIDSNMKI
VPVDTMQDAIDYLNKLKAKST

Nucleotide


Download         Length: 1026 bp        

>NTDB_id=706917 PF977_RS14360 WP_003245451.1 2738283..2739308(-) (sepM) [Bacillus subtilis strain SRCM124333]
TTGCTACGTAAAAAACATTTTAGCTGGATGCTCGTCATCCTCATACTGATCGCCGTTTTATCATTTATAAAACTTCCATA
CTATATTACAAAACCGGGAGAAGCGACAGAGCTTGCTTCATTGATAAAAGTGGAGGGAGGCTACCCGGAAAAAGGAAGCC
TGTCCTTAATGACTGTTAAAGTGGGACCGGCTAATCCATTTACATATGTGTGGGCAAAGATGCACCCTTATTATGAAATT
GTTCCTGATGAGAGCATTAAGGAGGAAGGCGAGTCAGATAAGGAGTATATGAAAAGACAGCTCCAAATGATGAAAAGCTC
GCAAGAAAATGCGGTTATAGCCGCCTATCAAAAGGCAGGAAAAAAAGTCAGCTATTCCTTTAACGGCATATACGCAAGCT
CAGTTGTAGAAAACATGCCGGCCAAAGGGAAAATAGAAGTCGGTGATAAAATCATCAGCGCAGACGGCAAAAACTATCAG
TCTGCTGAAAAGCTGATTGATTATATCAGCAGCAAAAAAGCGGGAGATAAAGTCACGTTAAAGATCGAAAGAGAAGAAAA
AGAAAAGCGTGTCACCCTTACGTTAAAACAATTTCCTGATGAGCCGGATCGGGCAGGAATCGGAGTTTCGCTTTATACAG
ACAGAAACGTGAAGGTAGAGCCTGATATTGATTTTGAAATCGAAAATATTGGCGGCCCGTCAGCAGGGTTAATGATGTCC
CTTGAAATCTATAATCAGCTGACAAAACCAGACGAAACAAAAGGCTACGATATTGCGGGAACAGGTACCATTGATGTTGA
TGGAAAAGTAGGCCCGATCGGCGGCATTGATCAAAAAGTCGTCGCCGCAGACAAAGCCGGAAAAGACATTTTCTTCGCGC
CAAATCAAAACGGCGCCAGCAATTCCGATTATAAGAACGCAGTAAAAACAGCAAAAGATATTGATTCAAATATGAAGATT
GTGCCTGTTGATACCATGCAGGATGCGATTGATTATTTGAATAAGCTGAAAGCGAAAAGCACCTGA

Domains

Predicted by InterProScan.

Lon protease (S16) C-terminal proteolytic domain (Lon_C)

(232-331)

Peptidase family M50 (Peptidase_M50)

(59-220)

PDZ domain (PDZ_2)

(128-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2KJP

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sepM Streptococcus mutans UA159

39.143

100

0.402