Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   PF977_RS14390 Genome accession   NZ_CP116012
Coordinates   2743203..2743652 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain SRCM124333     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2738203..2748652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS14360 (PF977_14360) sepM 2738283..2739308 (-) 1026 WP_003245451.1 protease DdcP Regulator
  PF977_RS14365 (PF977_14365) ylbK 2739310..2740092 (-) 783 WP_003232221.1 patatin family protein -
  PF977_RS14370 (PF977_14370) spoVV 2740273..2741499 (+) 1227 WP_015252149.1 dipicolinic acid transporter SpoVV -
  PF977_RS14375 (PF977_14375) coaD 2741510..2741995 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  PF977_RS14380 (PF977_14380) rsmD 2742000..2742554 (-) 555 WP_015715840.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  PF977_RS14385 (PF977_14385) ylbG 2742876..2743148 (-) 273 WP_015715839.1 YlbG family protein -
  PF977_RS14390 (PF977_14390) ylbF 2743203..2743652 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  PF977_RS14395 (PF977_14395) ylbE 2743768..2744007 (-) 240 WP_003232231.1 YlbE-like family protein -
  PF977_RS14400 (PF977_14400) ylbD 2744023..2744421 (-) 399 WP_003232233.1 YlbD family protein -
  PF977_RS14405 (PF977_14405) ylbC 2744653..2745693 (-) 1041 WP_015715838.1 CAP domain-containing protein -
  PF977_RS14410 (PF977_14410) ylbB 2745777..2746223 (-) 447 WP_003221362.1 CBS domain-containing protein -
  PF977_RS14415 (PF977_14415) ylbA 2746363..2746725 (+) 363 WP_003232238.1 YugN family protein -
  PF977_RS14420 (PF977_14420) ctaG 2746757..2747650 (-) 894 WP_033883825.1 cytochrome c oxidase assembly factor CtaG -
  PF977_RS14425 (PF977_14425) ctaF 2747677..2748009 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  PF977_RS14430 (PF977_14430) ctaE 2748012..2748635 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=706918 PF977_RS14390 WP_003221370.1 2743203..2743652(-) (ylbF) [Bacillus subtilis strain SRCM124333]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=706918 PF977_RS14390 WP_003221370.1 2743203..2743652(-) (ylbF) [Bacillus subtilis strain SRCM124333]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGACAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1