Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   PF976_RS09450 Genome accession   NZ_CP116011
Coordinates   1762313..1764898 (+) Length   861 a.a.
NCBI ID   WP_014470386.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1757313..1769898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS09430 (PF976_09430) - 1758117..1759292 (+) 1176 WP_013352322.1 glycine C-acetyltransferase -
  PF976_RS09435 (PF976_09435) miaB 1759435..1760964 (+) 1530 WP_007611533.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  PF976_RS09440 (PF976_09440) ymcA 1760967..1761398 (+) 432 WP_013352323.1 RicAFT regulatory complex protein RicA family protein Regulator
  PF976_RS09445 (PF976_09445) cotE 1761652..1762197 (+) 546 WP_013352324.1 outer spore coat protein CotE -
  PF976_RS09450 (PF976_09450) hexA 1762313..1764898 (+) 2586 WP_014470386.1 DNA mismatch repair protein MutS Machinery gene
  PF976_RS09455 (PF976_09455) hexB 1764914..1766791 (+) 1878 WP_013352326.1 DNA mismatch repair endonuclease MutL Machinery gene
  PF976_RS09460 (PF976_09460) - 1767257..1767934 (+) 678 WP_013352327.1 MBL fold metallo-hydrolase -
  PF976_RS09465 (PF976_09465) fabD 1768239..1769108 (+) 870 WP_013352328.1 ACP S-malonyltransferase -

Sequence


Protein


Download         Length: 861 a.a.        Molecular weight: 97569.93 Da        Isoelectric Point: 5.4191

>NTDB_id=706751 PF976_RS09450 WP_014470386.1 1762313..1764898(+) (hexA) [Bacillus amyloliquefaciens strain SRCM124317]
MASYTPMIQQYLKIKAEYQDAFLFFRLGDFYEMFFEDAKKASQELEITLTSRDGGSADKIPMCGVPYHSAAAYIEQLIKK
GYKVAICEQTEDPKAAKGVVKREVVQLITPGTVMDGKGIHESENNFIASVSAFPGGYGLALSDLTTGENLAVFIERIEDV
MSEIYSVGAKEIVVSSKFNENTAAQLKERCGATISIEDGKMTDRIEIAKHLPGEELTETFMRLYTYLQKTQKRSLDHLQP
VQVYELEEAMKIDLYSKRNLELTETIRSKSKKGSLLWLLDETKTAMGGRLLKQWIDRPLIRASQIEERQEMVETLINHLF
EREDLRERLKEVYDLERLAGRVAFGNVNARDLIQLKESLKQVPSIKELVGSLNHKKAKERAGLIDPCGDLLDLLEDALHE
NPPLSLKEGNLIKDGYHQKLDEYRDASKNGKDWIARLEQQERAYTGIRSLKVGFNKVFGYYIEVTKANLHLLEDGRYERK
QTLTNAERYITPELKEKEALILEAENNICELEYELFAGLREKVKQFIPRLQRLAKQMSELDALQCFATISENRHYTKPVF
SDNEVKVIEGRHPVVEKVMDSQEYVPNNCLMGESREMLLITGPNMSGKSTYMRQIALLSIMAQIGCFVPAKEAVLPIFDQ
IFTRIGAADDLISGQSTFMVEMLEAKNAIVNATKDSLILFDEIGRGTSTYDGMALAQAIIEYVHDHIGAKTLFSTHYHEL
TVLEDKLPQLKNVHVRAEEYNGTVVFLHQIKEGAADKSYGIHVAQLAELPDDLISRAQEILKQLEQSGDKPELPAAPEKK
PVVKEEPAQLSFFADGEKEQKAPAVSHKEKQVLEAFKSINILDMTPLEAMNEMYKLQKKLK

Nucleotide


Download         Length: 2586 bp        

>NTDB_id=706751 PF976_RS09450 WP_014470386.1 1762313..1764898(+) (hexA) [Bacillus amyloliquefaciens strain SRCM124317]
ATGGCTAGTTACACGCCTATGATACAGCAATACTTGAAGATAAAGGCAGAATACCAAGATGCCTTTTTATTTTTTCGGCT
TGGTGACTTTTATGAAATGTTTTTTGAAGATGCAAAAAAAGCGTCACAAGAGCTTGAAATTACACTGACAAGCAGAGACG
GAGGATCGGCTGATAAAATTCCGATGTGCGGCGTGCCTTATCATTCCGCGGCGGCTTATATTGAACAGCTGATTAAAAAG
GGCTATAAAGTCGCGATCTGTGAGCAGACGGAAGATCCGAAGGCGGCCAAAGGCGTTGTCAAAAGAGAAGTCGTCCAGCT
GATCACACCGGGAACCGTGATGGACGGAAAAGGCATTCATGAGTCGGAAAACAATTTTATCGCTTCCGTTTCCGCATTTC
CTGGCGGATACGGCCTTGCTTTATCAGACTTAACGACTGGAGAAAACCTCGCCGTATTTATTGAACGGATTGAAGATGTC
ATGTCAGAAATTTATTCAGTCGGCGCAAAGGAAATTGTCGTATCAAGCAAGTTTAATGAAAATACAGCGGCCCAGCTGAA
AGAACGGTGCGGCGCAACGATTTCCATCGAAGACGGGAAAATGACAGACCGGATTGAAATCGCAAAGCACTTACCTGGCG
AAGAGCTGACAGAGACGTTTATGCGTTTATATACGTATTTGCAGAAAACGCAAAAACGGAGCCTGGATCACCTGCAGCCG
GTTCAAGTGTATGAATTGGAAGAAGCGATGAAAATTGATCTGTATTCAAAACGGAATCTTGAACTGACAGAAACGATTCG
TTCGAAAAGCAAAAAAGGGTCACTGCTCTGGCTTTTAGACGAGACGAAAACAGCAATGGGCGGCAGGCTCCTCAAACAAT
GGATTGACCGCCCGCTGATCAGGGCATCCCAAATCGAAGAACGTCAGGAAATGGTCGAGACGCTGATCAATCATCTGTTT
GAGCGTGAAGATCTGCGCGAACGCCTGAAGGAAGTGTATGATTTGGAGCGTCTTGCGGGCCGGGTCGCATTCGGAAACGT
CAATGCAAGGGATTTAATCCAGCTGAAAGAATCGTTAAAACAGGTGCCGAGCATTAAAGAGCTTGTCGGGTCTCTTAACC
ATAAAAAAGCAAAAGAACGCGCCGGCTTGATTGACCCGTGCGGAGATCTGCTTGACCTGTTAGAAGATGCGCTGCATGAA
AACCCGCCGTTATCTTTAAAGGAAGGCAACTTAATAAAAGACGGCTATCATCAGAAGCTTGATGAGTACCGTGACGCCAG
CAAAAACGGAAAAGACTGGATTGCCAGACTGGAGCAGCAGGAACGCGCGTATACAGGCATCCGTTCATTAAAGGTCGGCT
TTAATAAAGTGTTCGGCTATTATATTGAAGTCACAAAAGCAAACCTTCATCTCCTTGAGGACGGGCGGTATGAGCGGAAG
CAGACGCTCACAAACGCCGAACGGTACATTACGCCGGAATTAAAGGAAAAAGAAGCGCTTATTTTAGAAGCGGAAAACAA
CATTTGCGAGCTGGAATATGAGCTTTTTGCCGGACTGCGTGAAAAGGTTAAGCAATTTATTCCGCGCCTGCAGCGTCTAG
CCAAGCAAATGAGTGAGCTCGACGCACTGCAATGCTTTGCCACGATCAGTGAAAACAGGCATTACACAAAGCCCGTCTTT
TCCGATAATGAGGTAAAAGTCATTGAAGGCAGACATCCTGTCGTTGAAAAGGTGATGGACAGTCAAGAATATGTGCCGAA
CAATTGCCTGATGGGCGAATCACGGGAAATGCTTTTGATTACGGGTCCGAATATGTCAGGTAAAAGCACGTACATGAGAC
AGATCGCACTTTTATCAATCATGGCCCAGATCGGCTGTTTTGTGCCCGCAAAAGAAGCAGTTCTGCCGATTTTTGATCAA
ATCTTTACGAGAATCGGGGCTGCGGACGATTTGATCTCCGGACAAAGCACCTTTATGGTGGAAATGCTGGAAGCGAAAAA
CGCGATCGTAAACGCCACAAAAGACAGCCTGATCCTGTTCGATGAAATCGGACGCGGGACGTCAACGTATGACGGAATGG
CGCTGGCACAGGCGATTATTGAATATGTCCATGATCATATCGGCGCTAAAACACTGTTCAGCACGCATTATCATGAACTG
ACGGTGCTTGAAGATAAGCTTCCTCAGCTGAAAAACGTTCATGTGCGCGCCGAGGAATATAACGGAACGGTCGTGTTTCT
CCATCAAATTAAAGAAGGAGCCGCCGATAAAAGTTACGGCATTCATGTCGCCCAGCTTGCCGAGCTCCCGGATGATCTGA
TCAGCCGCGCGCAGGAGATTCTGAAACAGCTAGAGCAGTCAGGAGATAAACCGGAGCTTCCGGCGGCACCTGAGAAAAAG
CCCGTCGTCAAGGAAGAACCGGCACAGCTGTCCTTTTTTGCAGACGGTGAAAAAGAACAGAAAGCACCGGCTGTTTCTCA
TAAAGAAAAACAAGTGCTTGAAGCCTTTAAGTCGATCAATATTCTTGATATGACGCCTCTTGAGGCGATGAATGAAATGT
ACAAGCTGCAAAAAAAATTAAAATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

48.308

99.535

0.481

  mutS Pseudomonas stutzeri strain ATCC 17587

38.514

100

0.391