Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   NLV76_RS12535 Genome accession   NZ_CP100752
Coordinates   2449967..2451697 (-) Length   576 a.a.
NCBI ID   WP_254500922.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2444967..2456697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS12525 (NLV76_12525) spo0A 2447437..2448240 (-) 804 WP_254500921.1 sporulation transcription factor Spo0A Regulator
  NLV76_RS12530 (NLV76_12530) spoIVB 2448515..2449792 (-) 1278 WP_059352386.1 SpoIVB peptidase -
  NLV76_RS12535 (NLV76_12535) recN 2449967..2451697 (-) 1731 WP_254500922.1 DNA repair protein RecN Machinery gene
  NLV76_RS12540 (NLV76_12540) argR 2451733..2452182 (-) 450 WP_254500923.1 arginine repressor ArgR -
  NLV76_RS12545 (NLV76_12545) - 2452279..2453124 (-) 846 WP_254500924.1 TlyA family RNA methyltransferase -
  NLV76_RS12550 (NLV76_12550) dxs 2453121..2455022 (-) 1902 WP_254500925.1 1-deoxy-D-xylulose-5-phosphate synthase -
  NLV76_RS12555 (NLV76_12555) - 2455200..2456090 (-) 891 WP_254500926.1 polyprenyl synthetase family protein -
  NLV76_RS12560 (NLV76_12560) - 2456080..2456334 (-) 255 WP_024122010.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64672.49 Da        Isoelectric Point: 4.7098

>NTDB_id=706683 NLV76_RS12535 WP_254500922.1 2449967..2451697(-) (recN) [Bacillus halotolerans strain MEC_B301]
MLAELSIKNFAIIEELTVSFERGLTVLTGETGAGKSIIIDAISLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFDVC
AEQGIDVSDEMIVMRRDISTNGKSVCRVNGKLVTIASLREIGRLLLDIHGQHDNQLLMEDENHLQLLDKFAGAEVESALQ
AYQEGYQRYMKLLKKLKQLSESEQEMAHRLDLIQFQLEEIESAKVELNEDEQLQEERQKISNFEKIFESLQNAYNALRSE
QGGLDWVGMASSQLEDLSDINEPLQKLSESVSNSYYLLEDATFQMRNMLDELEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYASKIEEEIDQIENRDSHLQSLKQEPDSVGKDVAVEAANVSRIRKMWAKKLAEEIHRELKSLYMEKSTFDTEFKV
RMATRGEEAPVVNGQPVQVTEQGIDLVKFLISTNTGEPLKSLSKVASGGEPSRVMLAIKSIFSSQQDVTSIIFDEVDTGL
SGRVAQAIAEKIHKVSMGSQVLCITHLPQVAAMADTHLYIAKELKDGRTTTRVKPLTKQEKVTEIGRMIAGVEVTDLTKR
HAKEPLKQADQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=706683 NLV76_RS12535 WP_254500922.1 2449967..2451697(-) (recN) [Bacillus halotolerans strain MEC_B301]
TTGTTAGCTGAATTATCGATTAAAAATTTTGCCATTATTGAGGAACTGACGGTTTCTTTTGAACGCGGGCTTACGGTTTT
AACAGGAGAAACCGGAGCCGGCAAATCCATCATCATAGATGCCATTTCACTTTTGGTCGGTGGCCGCGGTTCATCTGAAT
TTGTCAGATATGGAGAAACAAAAGCCGAGCTTGAAGGGCTGTTTCTGTTAGATAGCGGCCATCCCGTTTTTGACGTCTGT
GCTGAACAGGGGATTGACGTTTCAGATGAAATGATCGTCATGAGAAGGGATATCAGCACGAACGGAAAAAGCGTATGCCG
GGTTAATGGCAAACTTGTAACGATTGCGTCGCTTAGAGAAATCGGCAGGCTTTTATTAGATATTCACGGGCAGCACGATA
ACCAGCTGTTAATGGAGGACGAAAACCATCTTCAGCTTTTGGACAAGTTTGCGGGAGCCGAAGTGGAAAGCGCACTTCAA
GCGTATCAGGAAGGCTATCAGCGATATATGAAGCTGCTTAAAAAGCTGAAGCAGCTTTCTGAAAGTGAGCAGGAAATGGC
ACACCGGCTTGATCTGATTCAATTTCAGCTGGAAGAAATCGAATCAGCAAAGGTCGAACTGAACGAAGATGAGCAGCTGC
AAGAAGAGCGCCAGAAAATTTCAAATTTTGAGAAAATATTTGAATCACTGCAAAATGCTTATAACGCGCTGCGCAGCGAG
CAGGGCGGTCTGGACTGGGTCGGAATGGCGTCGTCTCAGCTTGAAGATTTATCCGATATTAACGAACCGCTGCAAAAACT
TTCTGAGAGTGTTTCGAACTCCTACTACCTTTTAGAGGACGCTACATTTCAGATGAGAAATATGCTGGATGAGCTTGAAT
ATGACCCGGAGCGCTTGAATTTTATTGAGACTCGTCTTAATGAGATCAAGCAGCTGAAGCGGAAATACGGGGCAACCGTT
GAGGATATTTTAGAATATGCTTCTAAAATTGAAGAAGAGATTGATCAAATTGAAAACAGAGACAGCCATCTGCAAAGCCT
GAAGCAGGAGCCGGATTCGGTTGGTAAAGATGTTGCAGTGGAAGCGGCAAACGTTTCCCGAATCCGAAAAATGTGGGCGA
AAAAGCTGGCTGAGGAAATCCATCGTGAACTGAAAAGCTTATATATGGAAAAGTCGACTTTCGATACGGAGTTTAAGGTC
AGAATGGCGACCCGCGGTGAGGAAGCGCCGGTCGTAAACGGACAGCCTGTTCAGGTCACTGAACAAGGGATTGATCTGGT
GAAGTTTTTAATTTCCACCAATACGGGCGAGCCGCTGAAATCTCTTTCTAAAGTCGCTTCCGGCGGAGAGCCGTCGAGGG
TCATGCTTGCCATTAAAAGCATTTTTTCCTCACAGCAGGACGTAACCTCGATTATATTTGACGAGGTAGATACAGGCCTA
AGCGGCAGGGTCGCTCAGGCTATTGCTGAAAAGATTCACAAAGTATCGATGGGATCACAAGTGCTATGCATTACGCACCT
GCCTCAGGTAGCAGCCATGGCCGATACCCATCTTTACATTGCGAAAGAATTAAAAGACGGAAGAACGACGACGCGTGTAA
AGCCGCTGACTAAACAAGAGAAGGTGACGGAAATCGGACGCATGATAGCAGGAGTTGAAGTTACAGACTTGACGAAACGC
CATGCGAAAGAGCCGTTAAAACAAGCGGATCAAGTCAAAACAACTGGGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_23)

(4-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

94.271

100

0.943