Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   NLV76_RS12525 Genome accession   NZ_CP100752
Coordinates   2447437..2448240 (-) Length   267 a.a.
NCBI ID   WP_254500921.1    Uniprot ID   -
Organism   Bacillus halotolerans strain MEC_B301     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 2442437..2453240
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NLV76_RS12510 (NLV76_12510) - 2442993..2444344 (+) 1352 WP_254500919.1 IS1182 family transposase -
  NLV76_RS12515 (NLV76_12515) - 2444641..2444928 (-) 288 WP_254500920.1 hypothetical protein -
  NLV76_RS12520 (NLV76_12520) - 2444941..2446851 (-) 1911 WP_202647475.1 right-handed parallel beta-helix repeat-containing protein -
  NLV76_RS12525 (NLV76_12525) spo0A 2447437..2448240 (-) 804 WP_254500921.1 sporulation transcription factor Spo0A Regulator
  NLV76_RS12530 (NLV76_12530) spoIVB 2448515..2449792 (-) 1278 WP_059352386.1 SpoIVB peptidase -
  NLV76_RS12535 (NLV76_12535) recN 2449967..2451697 (-) 1731 WP_254500922.1 DNA repair protein RecN Machinery gene
  NLV76_RS12540 (NLV76_12540) argR 2451733..2452182 (-) 450 WP_254500923.1 arginine repressor ArgR -
  NLV76_RS12545 (NLV76_12545) - 2452279..2453124 (-) 846 WP_254500924.1 TlyA family RNA methyltransferase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29687.12 Da        Isoelectric Point: 6.3913

>NTDB_id=706682 NLV76_RS12525 WP_254500921.1 2447437..2448240(-) (spo0A) [Bacillus halotolerans strain MEC_B301]
MEKIKVCVADDNREPVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKRKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIEPLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=706682 NLV76_RS12525 WP_254500921.1 2447437..2448240(-) (spo0A) [Bacillus halotolerans strain MEC_B301]
GTGGAGAAAATTAAAGTTTGTGTTGCTGACGATAATCGAGAGCCGGTAAGCCTGTTGAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTCATCGGAGTTGCGTATAATGGACAGGAATGCCTGTCGCTATTTAAAGAAAAAGATCCTGATGTGCTCG
TCTTGGATATTATTATGCCTCATTTGGACGGACTGGCTGTTTTAGAGCGACTGAGAGAATCCGATCTGAAAAAACAGCCA
AACGTCATCATGCTGACAGCCTTCGGGCAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGAGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGCCATATTCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGCGCGC
CGTCATCACAAAGCAGCATTATACGCAGCAGCCAGCCTGAACCAAAAAGGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCTGCACATATTAAAGGCTATCTCTATCTGCGTGAAGCGATCTCAATGGTGTACAACGATAT
CGAGCCGCTCGGCAGTATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCTAGCCGTGTAGAAA
GAGCGATCCGCCACGCGATTGAAGTGGCATGGAGCAGAGGGAATATTGATTCCATTTCCTCATTGTTCGGCTATACGGTC
AGCATGACGAAGGCAAAACCTACAAATTCAGAGTTCATTGCGATGGTTGCTGATAAGCTGAGGCTAGAACATAAAGCTAG
CTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(6-119)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

98.876

100

0.989