Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   PG908_RS06405 Genome accession   NZ_CP115957
Coordinates   1320100..1320723 (+) Length   207 a.a.
NCBI ID   WP_011001144.1    Uniprot ID   Q8Y050
Organism   Ralstonia pseudosolanacearum strain PSS4     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1315100..1325723
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PG908_RS06395 - 1317363..1319549 (+) 2187 WP_011001141.1 DNA polymerase III subunit gamma/tau -
  PG908_RS06400 - 1319646..1319993 (+) 348 WP_011001142.1 YbaB/EbfC family nucleoid-associated protein -
  PG908_RS06405 recR 1320100..1320723 (+) 624 WP_011001144.1 recombination mediator RecR Machinery gene
  PG908_RS06410 - 1320746..1322167 (-) 1422 WP_104071412.1 carbohydrate porin -
  PG908_RS06415 - 1322330..1323250 (+) 921 WP_011001146.1 LysR substrate-binding domain-containing protein -
  PG908_RS06420 - 1323283..1324491 (+) 1209 WP_020831706.1 CaiB/BaiF CoA transferase family protein -
  PG908_RS06425 - 1324586..1325635 (+) 1050 WP_011001148.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 207 a.a.        Molecular weight: 22509.89 Da        Isoelectric Point: 6.2270

>NTDB_id=706404 PG908_RS06405 WP_011001144.1 1320100..1320723(+) (recR) [Ralstonia pseudosolanacearum strain PSS4]
MMRGGPGTPSALQMLIEALRVLPGVGPKSAQRMAYHLLQHDREGASRLAEALAEAAESIHHCSRCNTFTEQDVCETCLDP
RRDASVLCVVETPADQMMIEQTLTYRGQYFVLMGRLSPLDNIGPKEIHLERLLARATDPALGGPCAEVILATNFTSEGEA
TAHYIGEMLKARGIKVSRLARGVPVGGELEYVDAGTIARAVLDRRQL

Nucleotide


Download         Length: 624 bp        

>NTDB_id=706404 PG908_RS06405 WP_011001144.1 1320100..1320723(+) (recR) [Ralstonia pseudosolanacearum strain PSS4]
ATGATGCGCGGCGGTCCGGGCACGCCATCGGCGCTGCAGATGCTGATCGAGGCCTTGCGCGTGCTGCCGGGCGTGGGGCC
GAAGTCTGCGCAGCGCATGGCCTATCACCTGCTGCAGCATGACCGCGAAGGCGCGTCGCGGCTGGCCGAAGCGCTGGCCG
AAGCGGCCGAGTCGATCCACCATTGCAGCCGCTGCAACACCTTCACCGAGCAGGATGTCTGCGAGACCTGCCTGGACCCG
CGCCGCGACGCCTCGGTGCTGTGCGTGGTGGAAACGCCCGCCGACCAGATGATGATCGAGCAGACGCTGACCTACCGCGG
CCAGTATTTCGTGCTGATGGGGCGGCTCTCGCCGCTGGACAACATCGGCCCCAAGGAAATCCACCTCGAGCGCCTGCTGG
CCCGGGCGACCGATCCGGCGCTGGGCGGGCCGTGCGCCGAAGTCATTCTCGCCACCAACTTCACCAGCGAGGGCGAGGCC
ACCGCGCACTACATCGGCGAGATGCTCAAGGCGCGCGGCATCAAGGTGTCGCGGCTGGCGCGCGGTGTGCCGGTGGGCGG
CGAGCTGGAATACGTGGACGCGGGCACCATCGCCCGCGCGGTGCTGGACCGGCGCCAGCTCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(85-180)

RecR protein (RecR_ZnF)

(45-83)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8Y050

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

46.734

96.135

0.449
  recR Bacillus subtilis subsp. subtilis str. 168

46.231

96.135

0.444
  recR Streptococcus pneumoniae R6

38.693

96.135

0.372